BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919854 Length=469 Score E Sequences producing significant alignments: (Bits) Value AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein... 676 0.0 AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein... 185 3e-46 > AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:3515365-3517888 REVERSE LENGTH=1793 Length=1793 Score = 676 bits (366), Expect = 0.0 Identities = 419/442 (95%), Gaps = 14/442 (3%) Strand=Plus/Plus Query 1 TCTTC-TTTGAGACAACaaaaaaaTGATAATGAGAAGAAGTCTAAGTCTGAGAAGCATCA 59 ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCGTTT-AGACAAC-AAAAAATGATAATGAGAAGAAGTCTAAGTCTGAGAAGCATCA 118 Query 60 CGATGATGATATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CGATGATGATATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCA 178 Query 120 GAAGAGGAAGACATTGGAGACATAGCCACCGAAGCTCTTCTGACTTGTCTGATTCCTTGT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GAAGAGGAAGACATTGGAGACATAGCCACCGAAGCTCTTCTGACTTGTCTGATTCCTTGT 238 Query 180 CAAGCAAGAAACCAAAGAGCCATGGGAATAGTCACCACCACAGTTCTCACAACAACCACA 239 ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 239 CAAACAAGAAACCGAAGAGCCATGGGAACAGTCACCACCACAGTTCTCACAACAAC-A-A 296 Query 240 ACGACAACCATCATCACAAGTCTAAACCCAAACCGAAACCAAAGCTGAAAATGCCGCCAA 299 | || | | | |||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 297 -C--CATC-A-C--CACAAGTCTAAACCTAAACCGAAACCAAAGCTGAAAACGCCGCCAA 349 Query 300 AATCT-AGCGACAATAACTCTCCGGTGGTTTCACGGCCACCAAAAGTCCAACCACCGCCT 358 || || | ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 350 AAGCTCA-CGACAATAACTCTCCGGTGGTTTCAGGGCCACCAAAAGTCCAACCACCGCCT 408 Query 359 CTTCCGCCGCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGAT 418 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 CTTCCGCCTCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGAT 468 Query 419 GGCAAATGTGATGACACTAAGG 440 |||||||||||||||||||||| Sbjct 469 GGCAAATGTGATGACACTAAGG 490 > AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:22314170-22316970 REVERSE LENGTH=1982 Length=1982 Score = 185 bits (100), Expect = 3e-46 Identities = 181/218 (83%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 12 ACAACaaaaa-a-aTGATAATGAGAAGA-AGTCTAA-GTCTGAGAAGCATCACGATGATG 67 |||||||||| | ||||||| ||| ||| ||| ||| | |||||||||||||| |||||| Sbjct 91 ACAACAAAAAGACATGATAACGAG-AGAGAGTTTAACG-CTGAGAAGCATCACAATGATG 148 Query 68 A-TATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCAGAAGAGG 126 | | ||| || | | |||||||||| | ||||||||||||||||||||||||||||| Sbjct 149 ACT-TTAGTGACAATCCTGGTCTGGTCTGCAACTCTAGAGACCTGCATTGCCAGAAGAGG 207 Query 127 AAGACATTGGAGACAT-AGCCACCGAAGCTCTTC-TGACTT-GTCTGATTCCTTGTCAAG 183 ||||||||||||||| | ||| | ||||| || | ||| ||||||||||||||| || Sbjct 208 AAGACATTGGAGACACCA-CCATAGGAGCTCCTCCT--CTTTGTCTGATTCCTTGTCCAG 264 Query 184 CAAGAAACCAAAGAGCCATGGGAATAGTCACCACCACA 221 |||||||||||| ||||||| ||| | |||||||||| Sbjct 265 CAAGAAACCAAAAAGCCATGAGAACAACCACCACCACA 302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22303961268 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5