BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919854
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein... 676 0.0
AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein... 185 3e-46
> AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:3515365-3517888 REVERSE LENGTH=1793
Length=1793
Score = 676 bits (366), Expect = 0.0
Identities = 419/442 (95%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 1 TCTTC-TTTGAGACAACaaaaaaaTGATAATGAGAAGAAGTCTAAGTCTGAGAAGCATCA 59
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCGTTT-AGACAAC-AAAAAATGATAATGAGAAGAAGTCTAAGTCTGAGAAGCATCA 118
Query 60 CGATGATGATATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGATGATGATATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCA 178
Query 120 GAAGAGGAAGACATTGGAGACATAGCCACCGAAGCTCTTCTGACTTGTCTGATTCCTTGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAGAGGAAGACATTGGAGACATAGCCACCGAAGCTCTTCTGACTTGTCTGATTCCTTGT 238
Query 180 CAAGCAAGAAACCAAAGAGCCATGGGAATAGTCACCACCACAGTTCTCACAACAACCACA 239
||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 239 CAAACAAGAAACCGAAGAGCCATGGGAACAGTCACCACCACAGTTCTCACAACAAC-A-A 296
Query 240 ACGACAACCATCATCACAAGTCTAAACCCAAACCGAAACCAAAGCTGAAAATGCCGCCAA 299
| || | | | |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 297 -C--CATC-A-C--CACAAGTCTAAACCTAAACCGAAACCAAAGCTGAAAACGCCGCCAA 349
Query 300 AATCT-AGCGACAATAACTCTCCGGTGGTTTCACGGCCACCAAAAGTCCAACCACCGCCT 358
|| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 350 AAGCTCA-CGACAATAACTCTCCGGTGGTTTCAGGGCCACCAAAAGTCCAACCACCGCCT 408
Query 359 CTTCCGCCGCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGAT 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CTTCCGCCTCAAAAGGGATCTCAAGTTTTCAATGTGATGGATTTTGGAGCAAAGGGTGAT 468
Query 419 GGCAAATGTGATGACACTAAGG 440
||||||||||||||||||||||
Sbjct 469 GGCAAATGTGATGACACTAAGG 490
> AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:22314170-22316970 REVERSE LENGTH=1982
Length=1982
Score = 185 bits (100), Expect = 3e-46
Identities = 181/218 (83%), Gaps = 14/218 (6%)
Strand=Plus/Plus
Query 12 ACAACaaaaa-a-aTGATAATGAGAAGA-AGTCTAA-GTCTGAGAAGCATCACGATGATG 67
|||||||||| | ||||||| ||| ||| ||| ||| | |||||||||||||| ||||||
Sbjct 91 ACAACAAAAAGACATGATAACGAG-AGAGAGTTTAACG-CTGAGAAGCATCACAATGATG 148
Query 68 A-TATTAATGGCTGTTTTGGTCTGGTCAGTGACTCTAGAGACCTGCATTGCCAGAAGAGG 126
| | ||| || | | |||||||||| | |||||||||||||||||||||||||||||
Sbjct 149 ACT-TTAGTGACAATCCTGGTCTGGTCTGCAACTCTAGAGACCTGCATTGCCAGAAGAGG 207
Query 127 AAGACATTGGAGACAT-AGCCACCGAAGCTCTTC-TGACTT-GTCTGATTCCTTGTCAAG 183
||||||||||||||| | ||| | ||||| || | ||| ||||||||||||||| ||
Sbjct 208 AAGACATTGGAGACACCA-CCATAGGAGCTCCTCCT--CTTTGTCTGATTCCTTGTCCAG 264
Query 184 CAAGAAACCAAAGAGCCATGGGAATAGTCACCACCACA 221
|||||||||||| ||||||| ||| | ||||||||||
Sbjct 265 CAAGAAACCAAAAAGCCATGAGAACAACCACCACCACA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22303961268
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5