BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919857
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10660.2 | Symbols: | unknown protein; LOCATED IN: endomemb... 1554 0.0
> AT1G10660.2 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:3532424-3535131
FORWARD LENGTH=1648
Length=1648
Score = 1554 bits (841), Expect = 0.0
Identities = 952/1006 (95%), Gaps = 5/1006 (0%)
Strand=Plus/Plus
Query 1 TTAGGACTCTATTGACGGGCCATGGCTGCTGATACCACATCTTCAAGTTACTGGTTGAAT 60
|||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 315 TTAGGACTGTATTGACTGGCCATGGCTGCTGATACCACAGCTTCAAGTTACTGGTTGAAT 374
Query 61 TGGAGGGTCATCCTCTGTGCATTAATCCTCTTAGCTCCACTAGTTTTAGCAGCTGTTCTC 120
||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 375 TGGAGGGTCCTCCTCTGTGCATTAATCCTCTTAGCTCCAATAGTATTAGCAGCTGTTCTC 434
Query 121 ATTTGGAAATATGAAGGCAAGAGGAGAAGACAACGCGAGAGCCAGCGAGTGTTACCCGGG 180
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 435 ATTTGGAAATATGAAGGCAAGAGAAGAAGACAACGCGAGAGCCAGCGAGAATTACCAGGG 494
Query 181 ACATTGTTCCAAGATGAAGCTTGGACCACATGTTTTAAAAGAATCCACCCTCTTTGGTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ACATTGTTCCAAGATGAAGCTTGGACCACATGTTTTAAAAGAATCCACCCTCTTTGGTTG 554
Query 241 CTTGCCTTTAGAGTATTCTCATTTGTTGCAATGTTGACTCTGCTCATCTCCAATGTTGTG 300
||||||||||| |||||||| |||||||||||||||||| | ||||| ||||||||||||
Sbjct 555 CTTGCCTTTAGGGTATTCTCGTTTGTTGCAATGTTGACTTTACTCATTTCCAATGTTGTG 614
Query 301 CGAGATGGAGCCGGCATATTCTACTTCTATACTCAGTGGACGTTTACTCTTGTCACACTC 360
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 615 CGCGATGGAGCTGGCATATTCTACTTCTATACTCAGTGGACATTTACTCTTGTCACACTC 674
Query 361 TACTTTGGGTATGCTTCGGTGTTATCTATTTATGGATGCTGCATCTACAATAAAGAAGCT 420
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 675 TACTTTGGGTATGCTTCGGTGTTATCTGTTTATGGATGCTGCATCTATAATAAAGAAGCT 734
Query 421 GGTGGAAACATGGAGAGTTATACAAGTATTGGTGATACGGAGCAAGGCACTTATAGACCA 480
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 735 AGTGGAAACATGGAGAGTTATACAAGTATAGGTGATACGGAACAAGGCACTTATAGACCA 794
Query 481 CCAATCGCTCTGGATGGGGAGGGAAATACGTCAAAATCATCCAATATACATTCAGAAGCA 540
||||||||||| |||||||||||||||||||||||| | ||||||| || ||||||||||
Sbjct 795 CCAATCGCTCTTGATGGGGAGGGAAATACGTCAAAAGCTTCCAATAGACCTTCAGAAGCA 854
Query 541 CCCGTCCGAGAAACAGCGGGGTTTTGGGTTTATACCTTTCAGATCCTTTTCCAAACTTGT 600
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 855 CCCGCCCGAAAAACAGCGGGGTTTTGGGTTTATATCTTTCAGATCCTTTTCCAAACTTGT 914
Query 601 GCAGGTGCTGTTGTGCTAACAGATATCGTATTTTGGGCAATAATCTACCCGTTTACTAAA 660
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 915 GCAGGTGCTGTTGTGCTAACAGATATTGTATTTTGGGCGATAATCTACCCGTTTACTAAA 974
Query 661 GGTTACAAGCTGAGTTTTCTCGATGTTTGTATGCATTCTCTCAATGCTGTTTTTCTCCTT 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 975 GGTTACAAGCTGAGTTTTCTCGATGTTTGTATGCATTCTCTCAACGCTGTTTTTCTCCTT 1034
Query 721 GGCGACACAAGCCTCAATTCCTTGCGATACCCCCTGTTCCGGATCT-CTTACTTTGTACT 779
|| ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||
Sbjct 1035 GGTGACACAAGCCTCAATTCCTTGCGATTCCCACTGTTCCGGAT-TGCTTACTTTGTACT 1093
Query 780 TTGGAGCTGCATTTTTGTAGCTTACCAATGGATAATCCATGCCGTCAAGAACTTATGGTG 839
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TTGGAGCTGTATTTTCGTGGCTTACCAATGGATAATCCATGCCGTCAAGAACTTATGGTG 1153
Query 840 GCCATACCAATTTCTTGATCTTTCGTCACCATATGCACCCTTATGGTACGTGGGAGTGGC 899
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1154 GCCATACCAATTTCTTGATCTTTCGTCACCATACGCACCCTTATGGTACTTGGGAGTGGC 1213
Query 900 AGTGATGCATATACCGTGCTTTGCGGTCTTCGCTTTGATCATAAAGCTGAAGAATCACTT 959
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1214 TGTGATGCATATACCATGCTTTGCGGTCTTCGCTTTGGTCATAAAGCTGAAGAATTACTT 1273
Query 960 GCTGCAGC-G--TCACAACTCGTAATAGTTTTGGTTTGCCCGAATT 1002
|||||||| | ||||||||||| ||||||||||| | ||||||||
Sbjct 1274 GCTGCAGCAGCGTCACAACTCGTGATAGTTTTGGTCTCCCCGAATT 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5