BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919860

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10690.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   518    2e-146


> AT1G10690.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G60783.1); 
Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3549992-3550632 
REVERSE LENGTH=641
Length=641

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 320/339 (94%), Gaps = 4/339 (1%)
 Strand=Plus/Plus

Query  5    ACATTCGAGATAAGTCATGGGATATTCCGGCAAACCTCACCACCAACTCGACGGCGAGAT  64
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49   ACATTCGAGAGAAGTCATGGGATATTCCGGCAAACCTCACCACCAACTCGACGGCGAGAT  108

Query  65   ACGAGAAAT-CACCGACGGTAAAAAATGGGTCATCGCCGGAATTCCCTCACGTTCGCCGC  123
            ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  109  ACGAG-AATCCACCGACGGTAAAAAATGGGTCATCGCCGGAATTCCCTCACGTTCCCCTC  167

Query  124  TCAAGCAGATTGACCTTTCTTCCGGCGTCACAGTTACCGAAACAGAGGATCAAGATCAGT  183
            ||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct  168  TCAAGCAGATTAACCTATCTCCCGGCGTCACAGTTACCGAAACAGAGGAGCAAGATCAGT  227

Query  184  GTCCGACGACCCCTACGGCGGTTTCCGTCAGAATTCCAAGGGTCCCGCCGTGTCCAGCGG  243
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  GTCCTACGACCCCTACGGCGGTTTCCGTCAGAATTCCAAGGGTCCCGCCGTGTCCAGCGG  287

Query  244  CGCCAAAGAAGCGAAAACCGTCGTTGAAGTGCAGTTACGGTG-CCGGCGCTAGAGATTTC  302
            ||||||||||||| ||||||||||||||||||||||||| |  ||| | ||||||||| |
Sbjct  288  CGCCAAAGAAGCGTAAACCGTCGTTGAAGTGCAGTTACG-TCACCGTCACTAGAGATTAC  346

Query  303  TTCTCTCCGCCGGACCTCGAAACCGTTTTCATTCAGAGA  341
            ||||||||||||||||| ||||||||||||||||| |||
Sbjct  347  TTCTCTCCGCCGGACCTAGAAACCGTTTTCATTCAAAGA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17442908903


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5