BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919870
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10670.3 | Symbols: ACLA-1 | ATP-citrate lyase A-1 | chr1:35... 942 0.0
AT1G60810.1 | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22... 701 0.0
> AT1G10670.3 | Symbols: ACLA-1 | ATP-citrate lyase A-1 | chr1:3535383-3538281
FORWARD LENGTH=1724
Length=1724
Score = 942 bits (510), Expect = 0.0
Identities = 539/553 (97%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 80 GATTAATGAAACAACTGATCTAAATGAGCTAGTTGAAAAGGAGCCTTGGCTCTCGTCCGA 139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 368 GATTAATGAAACAACTGATCTAAATGAGCTAGTTGAAAAGGAACCTTGGCTCTCGTCTGA 427
Query 140 GAAGCTGGTGGTGAAACCTGACATGTTGTTTGGAAAGCGTGGCAAGAGTGGTTTGGTTGC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAAGCTGGTGGTGAAACCTGACATGTTGTTTGGAAAGCGTGGCAAGAGTGGTTTGGTTGC 487
Query 200 CTTGAAATTAGATTTTGCTGATGTTGCCACTTTTGTGAAAGACCGTTTGGGCAAAGAGGT 259
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 488 CTTGAAATTAGATTTTGCTGATGTTGCCACTTTTGTTAAAGAACGTTTGGGAAAAGAGGT 547
Query 260 AGAGATGAGTGGATGCAAAGGACCCATAACAACATTCATAGTTGAGCCATTTGTTCCACA 319
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 548 AGAGATGAGTGGATGCAAAGGACCCATAACAACATTCATAGTTGAACCATTTGTTCCACA 607
Query 320 CAATGAGGAGTTTTATCTTAATGTTGTCTCGGATCGGCTTTTG-TGCAGCATAAGCTTTT 378
||||||||||| |||||| ||||||||||||||||||| || | ||||||||||||||||
Sbjct 608 CAATGAGGAGTATTATCTCAATGTTGTCTCGGATCGGC-TTGGTTGCAGCATAAGCTTTT 666
Query 379 CAGAGTGTGGAGGAATTGAGATCGAGGAGAACTGGGACAAGGTCAAGACAATATTTTTAC 438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTGAGTGTGGAGGAATTGAGATCGAGGAGAACTGGGACAAGGTCAAGACAATATTTTTAC 726
Query 439 CAACAGGTGCTTCCCTGACACCTGAAATATGTGCACCTCTAGTGGCAACTCTTCCCTTAG 498
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 727 CAACAGGTGCTTCCCTGACACCTGAAATATGTGCACCTCTTGTCGCAACTCTTCCCTTAG 786
Query 499 AGATCAAAGCTGAAATTGAAGAATTTATCAAAGTCATTTTCACCCTATTCCAAGATCTTG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGATCAAAGCTGAAATTGAAGAATTTATCAAAGTCATTTTCACCCTATTCCAAGATCTTG 846
Query 559 ATTTCACTTTCTTGGAGATGAATCCTTTCACTCTAGTTGATGGAAGTCCTTATCCTCTGG 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ATTTCACTTTCTTGGAGATGAATCCTTTCACTCTAGTTGATGGAAGTCCTTATCCTCTGG 906
Query 619 ATATGAGGGGTGA 631
|||||||||||||
Sbjct 907 ATATGAGGGGTGA 919
Score = 857 bits (464), Expect = 0.0
Identities = 566/611 (93%), Gaps = 23/611 (4%)
Strand=Plus/Plus
Query 631 AATGGGGCGACATTAAATTTCCTATGCCATTTGGAAGAGTAATGAGTCCGACAAAAAGCT 690
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 955 AATGGGGCGACATTGAATTTCCTCTGCCATTTGGAAGAGTAATGAGTCCTACAGAAAGCT 1014
Query 691 TTATCCACAGACTAGATGAGAAGACGACAAGTGCGTCTTTGAAGTTTACCGTTCTGAACC 750
|||||||| |||| |||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1015 TTATCCACGGACTGGATGAG-A-A-GACAAGTGCGTCTTTGAAGTTTACCGTTCTGAACC 1071
Query 751 CCAAGGGACGGATTTGGACAATGGTAGCTGGTGGAGGAGCAAGGGTCATCTATGCGGATA 810
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1072 CCAAGGGACGGATTTGGACAATGGTAGCTGGTGGAGGAGCAAGTGTCATCTATGCGGATA 1131
Query 811 CCGTTGGAGATCTCGGGTATGCATCTGAACTTGGCAACTATGCTGAATACAGTGGCGCAC 870
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1132 CGGTTGGAGATCTCGGGTATGCATCTGAACTTGGCAACTATGCTGAATACAGTGGAGCAC 1191
Query 871 CCAAAGAAGATGAGGTTTTGCAGTACACAAGAGTAGTTATAGATTGTGCTACAGCAAACC 930
|||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||
Sbjct 1192 CCAAAGAAGATGAGGTTTTGCAGTACGCCAGAGTCGTTATTGATTGTGCTACAGCAAACC 1251
Query 931 CGGATGGAAAAAGCAGAGCTCTTGTGATTGGGGGTGGAATTGCCAACTTCACTGATGTTG 990
||||||||||||||||||| ||||| || || || |||||||||||||||||||| ||||
Sbjct 1252 CGGATGGAAAAAGCAGAGCCCTTGTCATCGGAGGCGGAATTGCCAACTTCACTGACGTTG 1311
Query 991 CTGCCTGCTACTTTCAATGGCATAATCCGCG-----AA-G---------CAAAGCTGAAA 1035
|||| | |||||||||||||||||||||| || | |||||||||||
Sbjct 1312 CTGC-T---ACTTTCAATGGCATAATCCGCGCTCTTAAAGAAAAGGAAGCAAAGCTGAAA 1367
Query 1036 GCAGCAAGGATGCATATATTTGTGAGAAGAGGAGGACCAAACTACCAAA-GGGACTTGCT 1094
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1368 GCAGCAAGGATGCATATATTTGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCT 1427
Query 1095 AAAATGCGAGCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTCTATGGTCCAGAAGCA 1154
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1428 AAAATGCGAGCCCTTGGAGATGATATCGGTGTCCCCATCGAGGTCTATGGCCCAGAAGCA 1487
Query 1155 ACCATGACAGGTATCTGCAAGGAGGCAATCCAGTACATCACAGCAGCAGCATAAGCTTCT 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 ACCATGACAGGTATCTGCAAGGAGGCAATCCAGTACATCACAGCAGCAGCATAAGCTTCT 1547
Query 1215 CTCAGTACCTT 1225
|||||||||||
Sbjct 1548 CTCAGTACCTT 1558
> AT1G60810.1 | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22388527-22391165
REVERSE LENGTH=1488
Length=1488
Score = 701 bits (379), Expect = 0.0
Identities = 519/585 (89%), Gaps = 16/585 (3%)
Strand=Plus/Plus
Query 55 AAGAACTT-CCTATCAGATCCGTTCAGATTAATGAAACA-ACTGATCTAAATGAGCTAGT 112
||||| || ||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 126 AAGAA-TTGCCTATCAGATCCGTTCAGATTAA-CCAAGAGACTGATCTAAATGAGCTAGT 183
Query 113 TGAAAAG-GAGCCTTGGCTCTCGTCCGAGAAGCTGGTGGTGAAACCTGACATGTTGTTTG 171
| | || |||||||||||||| || |||||||| |||||||||||||| |||||||| |
Sbjct 184 AG-AGAGAGAGCCTTGGCTCTCATCTGAGAAGCTTGTGGTGAAACCTGATATGTTGTTCG 242
Query 172 GAAAGCGTGGCAAGAGTGGTTTGGTTGCCTTGAAATTAGATTTTGCTGATGTTGCCACTT 231
||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 243 GAAAGCGTGGCAAAAGCGGTTTGGTTGCATTGAACTTAGATTTCGCTGATGTTGCAACTT 302
Query 232 TTGTGAAAGACCGTTTGGGCAAAGAGGTAGAGATGAGTGGATGCAAAGGACCCATAACAA 291
| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCGTGAAAGAACGCTTAGGCAAAGAGGTAGAGATGAGTGGATGCAAAGGACCCATAACAA 362
Query 292 CATTCATAGTTGAGCCATTTGTTCCACACAATGAGGAGTTTTATCTTAATGTTGTCTCGG 351
||||||| ||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |
Sbjct 363 CATTCATTGTTGAACCATTTGTCCCACACAATGAAGAGTTCTATCTTAATATTGTCTCTG 422
Query 352 ATCGGCTTTTG-TGCAGCATAAGCTTTTCAGAGTGTGGAGGAATTGAGATCGAGGAGAAC 410
|| | ||| | |||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 423 ATAGACTTG-GCTGCAGCATTAGCTTTTCGGAGTGTGGAGGAATTGACATCGAGGAGAAC 481
Query 411 TGGGACAAGGTCAAGACAATATTTTTACCAACAGGTGCTTCCCTGACACCTGAAATATGT 470
||||||||||||||||| ||| | ||||||||||||||||||||||| ||| ||||||
Sbjct 482 TGGGACAAGGTCAAGACCATAACTATACCAACAGGTGCTTCCCTGACATTTGAGATATGT 541
Query 471 GCACCTCTAGTGGCAACTCTTCC-CTTAGAGATCAAAGCTGAAATTGAAGAATTTAT-CA 528
|||||||| || ||||| ||||| || ||||||||||| ||| ||||||| ||||| ||
Sbjct 542 GCACCTCTTGTTGCAACCCTTCCTCT-AGAGATCAAAGGGGAACTTGAAGATTTTATTCA 600
Query 529 AAGTCATTTTCACCCTATTCCAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTCA 588
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 A-GTCATTTTTACCCTATTCGAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTCA 659
Query 589 C-TCTAGTTGATGGAA-GTCCTTATCCTCTGGATATGAGGGGTGA 631
| | | |||||||||| | ||||||||||||||||||||||||||
Sbjct 660 CAT-TGGTTGATGGAAAG-CCTTATCCTCTGGATATGAGGGGTGA 702
Score = 667 bits (361), Expect = 0.0
Identities = 523/598 (87%), Gaps = 24/598 (4%)
Strand=Plus/Plus
Query 630 GAA-TGGGGCGACATTAAATTTCCTATGCCATTTGGAAGAGTAATGAGTCCGACAAAAAG 688
||| |||||||||||| ||||||| ||||||||||||||||| |||||| | ||| | ||
Sbjct 736 GAAGTGGGGCGACATTGAATTTCCCATGCCATTTGGAAGAGTGATGAGTTCAACAGAGAG 795
Query 689 CTTTATCCACAGACTAGATGAGAAGACGACAAGTGCGTCTTTGAAGTTTACCGTTCTGAA 748
||| |||||| | ||||||||| | | ||||||||| ||||||||||| || ||||||||
Sbjct 796 CTTCATCCACGGTCTAGATGAG-A-A-GACAAGTGCCTCTTTGAAGTTCACTGTTCTGAA 852
Query 749 CCCCAAGGGACGGATTTGGACAATGGTAGCTGGTGGAGGAGCAAGGGTCATCTATGCGGA 808
||||||||| | |||||||| ||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 853 TCCCAAGGGAAGAATTTGGACTATGGTAGCTGGAGGAGGTGCAAGTGTCATCTATGCTGA 912
Query 809 TACCGTTGGAGATCTCGGGTATGCATCTGAACTTGGCAACTATGCTGAATACAGTGGCGC 868
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 913 TACCGTTGGAGATCTCGGGTATGCATCTGAGCTTGGCAATTATGCTGAATACAGTGGAGC 972
Query 869 ACCCAAAGAAGATGAGGTTTTGCAGTACACAAGAGTAGTTATAGATTGTGCTACAGCAAA 928
|||||||||||| |||||||||||||| | ||||| || || |||||||||||||| ||
Sbjct 973 ACCCAAAGAAGACGAGGTTTTGCAGTATGCCAGAGTTGTCATTGATTGTGCTACAGCGAA 1032
Query 929 CCCGGATGGAAAAAGCAGAGCTCTTGTGATTGGGGGTGGAATTGCCAACTTCACTGATGT 988
||||||||||||||||| ||||| || ||||| ||||||||||| |||||||| |||||
Sbjct 1033 TCCGGATGGAAAAAGCAGGGCTCTGGTAATTGGAGGTGGAATTGCTAACTTCACCGATGT 1092
Query 989 TGCTGCCTGCTACTTTCAATGGCATAATCCG--C------G-AA---G---CAAAGCTGA 1033
|||||| | | ||| ||||||||||||||| | | || | |||||||||
Sbjct 1093 TGCTGC-TAC--CTT-CAATGGCATAATCCGAGCTCTCAAGGAAAAAGAAGCAAAGCTGA 1148
Query 1034 AAGCAGCAAGGATGCATATATTTGTGAGAAGAGGAGGACCAAACTACCAAA-GGGACTTG 1092
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1149 AAGCAGCAAGGATGCATATATTTGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTG 1208
Query 1093 CTAAAATGCGAGCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTCTATGGTCCAGAAG 1152
|||||||| || | |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1209 CTAAAATGAGATCACTTGGAGACGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAG 1268
Query 1153 CAACCATGACAGGTATCTGCAAGGAGGCAATCCAGTACATCACAGCAGCAGCATAAGC 1210
|||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1269 CAACAATGACAGGTATATGCAAGGAGGCAATCCAGTACATCACAGCGGCTGCATAAGC 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5