BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919872
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10730.1 | Symbols: | Clathrin adaptor complexes medium sub... 2039 0.0
AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes mediu... 1666 0.0
> AT1G10730.1 | Symbols: | Clathrin adaptor complexes medium subunit
family protein | chr1:3565463-3567779 FORWARD LENGTH=1287
Length=1287
Score = 2039 bits (1104), Expect = 0.0
Identities = 1229/1290 (95%), Gaps = 6/1290 (0%)
Strand=Plus/Plus
Query 21 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTGGTTTGG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGG 60
Query 81 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATC 120
Query 141 GAGAAAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTACGATAATGGGGTGACCTAC 200
|||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 121 GAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTAC 180
Query 201 ATGTTTGTACAGCATAGCAACATTTACCTCATGATAGCGTCCAGGCAGAACTGTAATGCT 260
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCT 240
Query 261 GCCAGTCTTCTCTTCTTCTTGCATCGCGTAGTCGATGTCTTCAAGCATTACTTCGAGGAG 320
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCCAGTCTTCTCTTCTTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGAG 300
Query 321 CTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATG 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATG 360
Query 381 ATGGACTTTGGTTACCCTCAATATACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACT 440
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACT 420
Query 441 GATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACAAATGCTGTCTCA 500
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 421 GATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTCA 480
Query 501 TGGAGGAGTGAGGGGTTACAGTTTAAGAAAAACGAAGTTTTCTTGGATGTAATAGAGAGT 560
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 TGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAGT 540
Query 561 GTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCGTTG 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTTG 600
Query 621 AAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGATAGAGTA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 601 AAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGACAGAATA 660
Query 681 CTGTTGGAGGCACAGGGAAGAGCAACAAAAGGAAAAGCCATTGATTTGGAAGACATCAAG 740
||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct 661 TTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCAAA 720
Query 741 TTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACTATATCTTTCATACCA 800
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 721 TTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATACCA 780
Query 801 CCTGATGGATCTTTTGATCTAATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATA 860
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATA 840
Query 861 TGGGTGGAAGCGCAGATAGAGAGGCATTCCAGAAGTCGTGTTGAAATGCTAGTAAAAGCT 920
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCTAGTAAAAGCT 900
Query 921 AGAAGCCAATTCAAGGAAAGAAGC-ACTGCAACAAATGTTGAGATTGAGTTGCCTGTACC 979
||||||||||||||||| |||||| | |||||||| ||||||||||||||| ||||||||
Sbjct 901 AGAAGCCAATTCAAGGACAGAAGCTA-TGCAACAAGTGTTGAGATTGAGTTACCTGTACC 959
Query 980 AACCGATGCATCTAACCCCAATGTAAGAACATCTCTTGGGTCTGCCGCATATGCTCCCGA 1039
||| ||||| | ||||||| |||||||||||||||| ||||| |||||||||||||| ||
Sbjct 960 AACTGATGCGTATAACCCCGATGTAAGAACATCTCTCGGGTCGGCCGCATATGCTCCTGA 1019
Query 1040 AAAAGATGCACTGGTCTGGAAAAT-CAAATCTTTCCCA-GGGAACAAGGAGTATATGTTG 1097
|||||||||||||||||||| || ||| | |||| | |||||||||||| ||| |||
Sbjct 1020 GAAAGATGCACTGGTCTGGAAGATACAA-TATTTCT-ATGGGAACAAGGAGCATACATTG 1077
Query 1098 AGAGCAGAGTTCCATCTTCCAAGTATAACCGCAGAGGAAGCAACGCCTGAGCGAAAAGCT 1157
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1078 AAAGCAGATTTCCATCTTCCAAGTATAGCCGCAGAGGAAGCAACGCCTGAGCGAAAAGCT 1137
Query 1158 CCAATCCGTGTCAAATTCGAGATCCCATACTTCACAGTTTCAGGAATACAGGTTCGATAC 1217
||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1138 CCAATCCGTGTCAAATTTGAGATCCCAAAATTCATAGTTTCAGGAATACAGGTTCGATAC 1197
Query 1218 CTGAAGATCATTGAGAAGAGTGGGTACCAAGCTCTTCCATGGGTGAGATATATAACCATG 1277
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1198 CTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATATATAACCATG 1257
Query 1278 GCTGGTGAGTACGAACTGAGACTCATGTAA 1307
||||||||||||||||||||||||||||||
Sbjct 1258 GCTGGTGAGTACGAACTGAGACTCATGTAA 1287
> AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium
subunit family protein | chr1:22368953-22372159 REVERSE
LENGTH=1897
Length=1897
Score = 1666 bits (902), Expect = 0.0
Identities = 1167/1298 (90%), Gaps = 6/1298 (0%)
Strand=Plus/Plus
Query 14 GAAGAACATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCT 73
||||||||||||||| || ||||| |||||||||||||| |||||||| || || |||||
Sbjct 268 GAAGAACATGGCAGGAGCTGCCTCCGCGCTGTTTCTGCTTGATATCAAGGGACGCGTTCT 327
Query 74 GGTTTGGCGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAA 133
|| ||||| ||||| |||||||||||| ||||||||||||| ||||| |||||||| ||
Sbjct 328 CGTCTGGCGTGATTATCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAA 387
Query 134 ACTCATCGAGAAAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTACGATAATGGGGT 193
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 388 GCTCATCGAGAAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGGGT 447
Query 194 GACCTACATGTTTGTACAGCATAGCAACATTTACCTCATGATAGCGTCCAGGCAGAACTG 253
||| || ||||||||||| ||||| || | ||| | |||||||| ||||||||||| ||
Sbjct 448 GACTTATATGTTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGGCAGAATTG 507
Query 254 TAATGCTGCCAGTCTTCTCTTC-TTCTTGCATCGCGTAGTCGATGTCTTCAAGCATTACT 312
|||||||||||||||||||||| ||||| || ||||| |||||||| |||||||||||||
Sbjct 508 TAATGCTGCCAGTCTTCTCTTCTTTCTT-CACCGCGTTGTCGATGTTTTCAAGCATTACT 566
Query 313 TCGAGGAGCTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTG 372
|||||||| |||| || ||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 567 TCGAGGAGTTAGAAGAGGAATCATTGAGGGATAACTTTGTGGTAGTGTATGAGCTACTTG 626
Query 373 ACGAGATGATGGACTTTGGTTACCCTCAATATACTGAGGCAAGAATCCTTAGTGAATTCA 432
|||||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||
Sbjct 627 ACGAGATGATGGACTTTGGTTACCCTCAGTATACCGAAGCAAGAATTCTCAGTGAATTCA 686
Query 433 TCAAGACTGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACAAATG 492
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 687 TCAAGACTGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACGAATG 746
Query 493 CTGTCTCATGGAGGAGTGAGGGGTTACAGTTTAAGAAAAACGAAGTTTTCTTGGATGTAA 552
||||||| |||||||||||||| |||||| ||||| || ||||||||||||||||| |
Sbjct 747 CTGTCTCCTGGAGGAGTGAGGGAATACAGTACAAGAAGAATGAAGTTTTCTTGGATGTTA 806
Query 553 TAGAGAGTGTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTG 612
| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 807 TTGAGAATGTAAATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTG 866
Query 613 GAGCGTTGAAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGG-CTTGAAT 671
||||| ||||||||||||| ||||||| ||||||||||||||||||| |||| || ||||
Sbjct 867 GAGCGCTGAAGATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACT-GAAT 925
Query 672 GATAGAGTACTGTTGGAGGCACAGGGAAGAGCAACAAAAGGAAAAGCCATTGATTTGGAA 731
||||||||| || |||| || |||||| ||||||| || ||||||||||||||||||||
Sbjct 926 GATAGAGTATTGCTGGAAGCGCAGGGACGAGCAACTAAGGGAAAAGCCATTGATTTGGAG 985
Query 732 GACATCAAGTTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACTATATCT 791
|||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 986 GACATCAAATTTCATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCT 1045
Query 792 TTCATACCACCTGATGGATCTTTTGATCTAATGACGTATAGACTCAGTACTCAGGTAAAG 851
||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1046 TTCATACCACCTGATGGGGCTTTTGATCTGATGACATATAGACTCAGCACTCAGGTAAAG 1105
Query 852 CCTCTTATATGGGTGGAAGCGCAGATAGAGAGGCATTCCAGAAGTCGTGTTGAAATGCT- 910
|| ||||||||||||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct 1106 CCACTTATATGGGTGGAAGCACAAATAGAAAGTCATTCAAGAAGTCGTGTTGAGATGCTC 1165
Query 911 AGTAAAAGCTAGAAGCCAATTCAAGGAAAGAAGCACTGCAACAAATGTTGAGATTGAGTT 970
| ||||||||||||| || ||||||||| ||||||| ||||| || ||||||||||||||
Sbjct 1166 A-TAAAAGCTAGAAGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTT 1224
Query 971 GCCTGTACCAACCGATGCATCTAACCCCAATGTAAGAACATCTCTTGGGTCTGCCGCATA 1030
||||||||||||||||||||||||||||| || || |||||||| ||||||||| | ||
Sbjct 1225 GCCTGTACCAACCGATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTA 1284
Query 1031 TGCTCCCGAAAAAGATGCACTGGTCTGGAAAATCAAATCTTTCCCAGGGAACAAGGAGTA 1090
|||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1285 TGCTCCTGAAAAAGATGCGTTAGTCTGGAAAATCAAATCTTTCCCGGGGAACAAGGAGTA 1344
Query 1091 TATGTTGAGAGCAGAGTTCCATCTTCCAAGTATAACCGCAGAGGAAGCAACGCCTGAGCG 1150
||||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1345 CATGTTAAGGGCAGAGTTCCATCTTCCAAGTATCACTGCAGAGGAAGCAACTCCTGAGCG 1404
Query 1151 AAAAGCTCCAATCCGTGTCAAATTCGAGATCCCATACTTCACAGTTTCAGGAATACAGGT 1210
||| ||||| |||||||||||||| |||||||| || ||||| |||||||| || |||||
Sbjct 1405 AAAGGCTCCTATCCGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGT 1464
Query 1211 TCGATACCTGAAGATCATTGAGAAGAGTGGGTACCAAGCTCTTCCATGGGTGAGATATAT 1270
||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1465 TCGGTACCTAAAGATTATTGAGAAGAGTGGGTACCAAGCACTTCCATGGGTGAGATACAT 1524
Query 1271 AACCATGGCTGGTGAGTACGAACTGAGACTCATGTAAT 1308
|||||||||||||||||||||||| |||||| ||||||
Sbjct 1525 AACCATGGCTGGTGAGTACGAACTAAGACTCGTGTAAT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65310909045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5