BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919880
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10750.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2386 0.0
AT2G44240.1 | Symbols: | Protein of Unknown Function (DUF239) ... 58.4 2e-07
> AT1G10750.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:3574807-3578474 REVERSE LENGTH=1747
Length=1747
Score = 2386 bits (1292), Expect = 0.0
Identities = 1397/1448 (96%), Gaps = 5/1448 (0%)
Strand=Plus/Plus
Query 2 AGAAAACGTTTTGGGTTTTAATGGGAGGTGTGTTCGTGTTGAGGAAACCCAGAAACGGCA 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 145 AGAAAACGTTTTGGGCTTTGATGGGAGGTGTGTTCGTGTTGAGGAAACCCAGAAACGGCA 204
Query 62 ATAAATGCCGTTGTTTCGATCGATGCAATACAATGAGACAAACGGAAACAGAGTTGTTCT 121
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 205 ATAAATGCCGTCGTTTCGATCGATGCATTACAATGAGACAAACGGAAACAGAGTTGTTCT 264
Query 122 CagaagaaacaagaatgataacaagacgaggaagaagaagaaaaagaagaagCTTCTTCT 181
|||||||||||||||||| ||||||| || || |||| ||| |||||||||||||||||
Sbjct 265 CAGAAGAAACAAGAATGAGAACAAGA-GA--AACAAGACGAAGAAGAAGAAGCTTCTTCT 321
Query 182 TAGATATGATCCTTTTGTTTCGTACTTGTTCCCCCAACAttctcttcctctctcttcttc 241
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 322 TAGATATGATCCTTCTGTTTCGTACTTGTTCCTCCAACATTCTTTTCCTCTCTCTTCTTC 381
Query 242 tcttgtcttcttctttttcctctgtcttgtccgagaatctctcACCGAAAAACCAAACTC 301
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 382 TCTTGTCTTCTTCTTTTTCCTCTGTCTTGTCCGAGAATCTCTCACCTAGAAACCAAACTC 441
Query 302 TCAGGCCACTCGAGGAGCTTAATAAGCTCAAAGCCATTAATCAACATCTCAGGAAGATCA 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TCAGGCCACTCGATGAGCTTAATAAGCTCAAAGCCATTAATCAACATCTCAGGAAGATCA 501
Query 362 ATAAACCTTCAATCAAGACAATTCATAGTCCTGATGGTGACATCATAGACTGTGTTTTAT 421
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 502 ATAAACCTTCAATTAAGACAATTCATAGCCCCGATGGAGACATCATAGACTGTGTTTTAT 561
Query 422 TACATCACCAACCAGCATTTGATCATCCCAGATTAAGAGGACAGAAGCCACTGGATCCTC 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 562 TACATCACCAACCAGCATTTGATCATCCCAGCTTAAGAGGACAGAAGCCACTGGATCCTC 621
Query 482 CTGAGAGGCCAAAAGGGCATAACAGGAGAGGATTGAGACCAAAGAGTTTCCAGTTATGGG 541
| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 622 CAGAGAGGCCAAGAGGGCATAACAGGAGAGGATTGAGACCGAAGAGCTTCCAGTTATGGG 681
Query 542 GAATGGAGGGAGAGACATGTTCTGAAGGAACAGTCCCTATCAGAAGAACAAAAGAAGAAG 601
|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 682 GAATGGAGGGGGAGACATGTCCTGAGGGAACAGTCCCTATCAGAAGAACAAAAGAAGAAG 741
Query 602 ACATTCTCAGAGCAAACTCTGTTACTAGCTTTGGCAAGAAACTCAGACATTACAGAAGAG 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 742 ACATTCTCAGAGCAAACTCTGTTTCTAGCTTTGGCAAGAAACTCAGACATTACAGAAGAG 801
Query 662 ACACTAGCAGTAATGGCCATGAACACGCGGTGGGATACGTGAGCGGAGAGAAATACTATG 721
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 ACACTAGCAGTAATGGGCATGAACACGCGGTGGGATACGTGAGCGGAGAGAAATACTATG 861
Query 722 GTGCTAAAGCAAGCATCAATGTTTGGGCTCCACAAGTGCAGAACCAATACGAATTTAGTC 781
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 862 GTGCTAAAGCAAGCATCAATGTTTGGGCTCCACAAGTTCAGAACCAATACGAATTTAGTT 921
Query 782 TATCTCAGATTTGGATTATCTCTGGTTCCTTTGGTAATGACCTCAACACCATTGAAGCTG 841
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 922 TATCTCAGATTTGGATTATCTCTGGTTCCTTTGGCAATGATCTCAACACCATTGAAGCTG 981
Query 842 GCTGGCAGGTGAGTCCAGAGCTCTATGGAGATAATTACCCAAGATTCTTTACTTACTGGA 901
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GTTGGCAGGTGAGTCCAGAGCTCTATGGAGATAATTACCCAAGATTCTTTACTTACTGGA 1041
Query 902 CTAACGATGCATATCAAGCAACCGGTTGCTACAATCTCTTGTGTTCCGGTTTTGTCCAAA 961
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1042 CTAACGATGCATATCAAGCAACAGGTTGCTACAATCTCTTGTGTTCCGGTTTTGTCCAAA 1101
Query 962 CCAATAGTGAGATTGCGATTGGAGCTGCAATCTCTCCATCGTCTTCCTACAAGGGTGGAC 1021
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1102 CCAATAGTGAGATTGCGATTGGAGCTGCCATCTCTCCCTCGTCTTCATACAAGGGTGGAC 1161
Query 1022 AATTCGATATTACTCTGCTTATTTGGAAGGATCCGAAGCATGGGAATTGGTGGCTGGAAT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AATTCGATATTACTCTGCTTATTTGGAAGGATCCGAAGCATGGGAATTGGTGGCTGGAAT 1221
Query 1082 TCGGGTCGGGTATTCTAGTTGGGTATTGGCCATCGTTTTTGTTCACACACCTGAAGGAGC 1141
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1222 TCGGGTCGGGTATTCTAGTCGGGTATTGGCCATCGTTCTTGTTCACACACCTGAAGGAGC 1281
Query 1142 ACGCAAGCATGGTCCAATACGGTGGTGAAATCGTAAATTCGAGTCCTTTTGGAGCCCATA 1201
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1282 ACGCAAGCATGGTCCAATACGGTGGCGAAATCGTAAATTCGAGTCCTTTTGGAGCCCATA 1341
Query 1202 CTTCAACACAAATGGGAAGTGGACATTTTGCAGAGGAAGGGTTTACAAAATCTTCTTATT 1261
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTTCAACACAGATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTACAAAATCTTCTTATT 1401
Query 1262 TCAGAAACATCCAAGTAGTTGATTGGGATAACAATTTGGTCCCTTCTCCTAATCTTCGAG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TCAGAAACATCCAAGTAGTTGATTGGGATAACAATTTGGTCCCTTCTCCTAATCTTCGAG 1461
Query 1322 TACTTGCGGATCATCCGAATTGTTACGATATTCAAGGTGGGTCTAATCGGGCTTGGGGGA 1381
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1462 TACTTGCGGATCATCCGAATTGTTACGATATTCAAGGTGGGTCTAATAGGGCTTGGGGGA 1521
Query 1382 GTTATTTTTATTATGGTGGACCAGGGAAGAATCCTAAATGCCCTTAAAGAAAAA-TCTAA 1440
||||||||||||| || ||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 1522 GTTATTTTTATTACGGAGGACCAGGGAAAAATCCTAAATGCCCTTAAAGAAAAAAT-TAA 1580
Query 1441 TTAGGGTT 1448
||||||||
Sbjct 1581 TTAGGGTT 1588
> AT2G44240.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18289824-18292345 FORWARD LENGTH=1490
Length=1490
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1213 ATGGGAAGTGGACATTTTGCAGAGGAAGGGTTTA 1246
|||||||||||||||||||||||||||||| |||
Sbjct 1131 ATGGGAAGTGGACATTTTGCAGAGGAAGGGATTA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5