BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919885

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   560    3e-159


> AT1G10800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence 
meristem, hypocotyl, root, flower; EXPRESSED DURING: petal 
differentiation and expansion stage; Has 23 Blast hits 
to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 1 (source: NCBI BLink). | chr1:3598158-3598591 REVERSE LENGTH=434
Length=434

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 347/369 (94%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  1    GCATTCTCGCTGTTAAATCCATGGCTCTGGCTGTTGCTATGGGTAAATCGTTCTTCATAC  60
            |||||||||| ||||||||||||||||||| |||||||||||| || || ||||||| ||
Sbjct  58   GCATTCTCGCCGTTAAATCCATGGCTCTGGTTGTTGCTATGGGGAAGTCATTCTTCAAAC  117

Query  61   AACCTGGTTGTGTAATGGATGGTGCACTTGCGATTGTAGCTCTGATTCTCCAGGTGCTTC  120
            ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct  118  AACCTGGATGTGTAATGGATGGTACTCTTGCGATTGTAGCTCTGATTCTCCAGGTTCTTC  177

Query  121  TTGAGAAGAAAGGAACCGGGTTCATCGTGGTGGTAAGCTTGTGGCGGGTTCTGAGGGTTG  180
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  178  TTGAGAAGAAAGGAACCGGGTTCATCGTGGTGGTGAGCTTGTGGCGGGTTCTGCGGGTTG  237

Query  181  TAGAGACTGCGTTTGAGCTTAGTGATGAAGCCATTGAAGTAAAGATAGATGGAATCATCA  240
            | |||||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||
Sbjct  238  TGGAGACTGCATTTGAACTTAGTGATGAAGCCATTGAAGTGCAGATAGATGGAATCATCA  297

Query  241  GCCAGTTTCAAGCTCTTAGTAAAGAGAATAGAACATTGCTAGAGACTCTTGCAGAGAAAG  300
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  298  GCCAGTTTCAAGCTCTTAGTAAAGAGAATAGAACATTGCTGGAGACTCTTGCAGAGAAAG  357

Query  301  ATGAAGTAATTAAGATGCTAGAGGAAGAGCTAAACCGATTCAAAGAAAATGGCGATATTC  360
            ||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct  358  ATGAAGTAATTAAGATGCTAGAGGAAGAGCTTAATCGATTCAAAGAAAACGGTGATATTC  417

Query  361  CATTTGTGA  369
            |||||||||
Sbjct  418  CATTTGTGA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19503886612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5