BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919886
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10810.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1061 0.0
AT1G60680.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 496 2e-139
> AT1G10810.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:3599271-3600877 FORWARD LENGTH=1253
Length=1253
Score = 1061 bits (574), Expect = 0.0
Identities = 631/659 (96%), Gaps = 2/659 (0%)
Strand=Plus/Plus
Query 375 GATCGATACCACTGTCCCCATTGAAGTCACTATTGGAGAACTAAAGAAGCTAGTTGAAGA 434
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 491 GATCGATACCACTGTCCCCATTGAAGTCACTATTGGAGAACTGAAGAAGCTAGTTGAAGA 550
Query 435 GGGTAAGATAAAGTACATTGGTTTGTCCGAAGCCTCTGCCTCAACTATAAGGCGAGCCCA 494
||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||
Sbjct 551 GGGTAAGATAAAGTACATTGGTTTGTCTGAAGCCTGTGCCTCGACTATAAGAAGAGCCCA 610
Query 495 TGCTGTTCACCCGCTAACAGCCGTGCAGTTGGAATGGTCTTTGTGGTCGAGAGACGTTGA 554
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 611 TGCTGTTCACCCGCTAACCGCTGTGCAGTTGGAATGGTCTTTATGGTCGAGAGACGTTGA 670
Query 555 AGAAGACATCATTCCTACTTGCAGGGAACTCGGGATTGGAATTGTAGCTTATAGTCCTCT 614
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 671 AGAAGACATCATTCCTACTTGCAGGGAGCTCGGGATTGGAATTGTAGCTTACAGTCCTCT 730
Query 615 GGGAC-GGGGCTTCTTTGCTGCAGGACCAAAGTTCATTGAGAATATGGACAATGGTGACT 673
||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 731 GGGACTGGGG-TTCTTTGCTGCAGGACCAAAATTCATTGAGAGTATGGACAATGGTGACT 789
Query 674 ACAGAAAGGGTTTACCGAGATTCCAGCAAGAGAACCTAGACCACAACAAGATTCTCTATG 733
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 790 ACAGAAAGGGTTTACCGAGATTCCAGCAAGAGAACTTAGACCACAACAAGATTCTCTATG 849
Query 734 AGAAGGTCAATGCAATGGCAGAGAAGAAAAGCTGTACTCCTGCACAATTAGCTTTGGCAT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGAAGGTCAATGCAATGGCAGAGAAGAAAAGCTGTACTCCTGCACAATTAGCTTTGGCAT 909
Query 794 GGGTTCATCACCAAGGAAATGATGTCTGCCCAATCCCAGGAACCTCCAAGATCAAAAACC 853
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 910 GGGTTCATCACCAAGGAAATGATGTCTGCCCAATCCCAGGAACCTCTAAGATCAAAAACC 969
Query 854 TTGATCAGAACATAGGAGCTTTATCTGTCAAACTCACTATCGAAGAGATGGCCGAGCTTG 913
|| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 970 TTAATCAGAACATAGGAGCTTTATCTGTGAAACTCAGTATCGAAGAGATGGCCGAGCTTG 1029
Query 914 ACGCCATGGGACATCCGGATTCTGTGAAAGGGGAAAGCTCACCCACCTATATAGTTACCT 973
|||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 1030 ACGCCATGGGACATCCCGATTCTGTGAAAGGGGAAAGGTCAGCCACCTATATAGTTACTT 1089
Query 974 ACAAGAATTCCGAAACTCCACCATTGTCTTCTTGGACTTCATAAACCAGCTGTTATAGT 1032
|||||||||| |||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 1090 ACAAGAATTCTGAAACTCCACCACTGTCTTCTTGGACTTCATAAACCATCTGTAATAGT 1148
Score = 534 bits (289), Expect = 5e-151
Identities = 345/371 (93%), Gaps = 7/371 (2%)
Strand=Plus/Plus
Query 8 AGAGATTTGAATCCATGGCGGCTGCAAGTGGAGTGCGTAGGATCAAGCTAGGAAGCCAAG 67
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 85 AGAGATTTGAATCCATGGCAGCTGCAAGTGGAGTGCGTAGGATCAAGCTAGGAAGCCAAG 144
Query 68 GTCTTCAAGTGTCAGCGCAAGGTCTTGGTTGTATGGGACTTTCCATCTTAGATGGAACCA 127
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 145 GTCTTGAAGTGTCAGCGCAAGGTCTTGGTTGTATGGGACTTTCCATCTTCGATGGAACTA 204
Query 128 CTAAGCTAGACG-CAGATCT-AGTTGCTCTCATTCACCATGCCATTAACTCCGGCATCAC 185
| ||| | || | ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 205 CCAAGGTTGA-GACAGATCTCA-TTGCTCTCATTCACCATGCCATTAACTCCGGCATCAC 262
Query 186 GCTCCTCGACACCTCTGACATTTACGGTCCCGAGACCAACGAGTTGCTCCTTGGCCAGGC 245
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 263 ACTCCTCGACACCTCCGACATTTACGGTCCTGAGACCAACGAGTTGCTCCTTGGTCAGGC 322
Query 246 TTTGAGAGATGGGATGAGGGAGAAAGTGGAATTGGCAACCAAATTTGGGATTCTCTT-AA 304
||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 323 TTTGAAAGATGGGATGAGGGAGAAGGTGGAATTGGCAACCAAATTTGGGCTTCTCTTGAA 382
Query 305 GAGGTGAGAAATTGGGTTACAGGGGAGATCCTGCCTATGTGAGAGCTGCGTGTGAAGCCA 364
|| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 383 -AGATCAGAAATTGGGTTACAGGGGAGATCCAGCCTATGTGAGAGCTGCCTGTGAAGCAA 441
Query 365 GCTTAAAGGCG 375
|||||| ||||
Sbjct 442 GCTTAA-GGCG 451
> AT1G60680.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22347622-22349297 REVERSE LENGTH=1304
Length=1304
Score = 496 bits (268), Expect = 2e-139
Identities = 524/646 (81%), Gaps = 24/646 (4%)
Strand=Plus/Plus
Query 376 ATCGATACCAC-TGTCCCCATTGAAGTCACTATTG-GAGAACTAAAGAAGCTAGTTGAAG 433
||||||| | | |||||| || ||| |||||| || ||||||| ||||||||||||||||
Sbjct 458 ATCGATA-CTCGTGTCCCTATCGAAATCACTA-TGAGAGAACTGAAGAAGCTAGTTGAAG 515
Query 434 AGGGTAAGATAAAGTACATTGGTTTGTCCGAAGCCTCTGCCTCAACTATAAGGCGAGCCC 493
|||||||||||||||| |||||| |||| ||||| || || |||||||| || |||| |
Sbjct 516 AGGGTAAGATAAAGTATATTGGTCTGTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCAC 575
Query 494 ATGCTGTTCACCCGCTAACAGCCGTGCAGTTGGAATGGTCTTTGTGGTCGAGAGACGTTG 553
|||||||||||||| |||| || ||||| | |||||||| || ||||||||||||| |
Sbjct 576 ATGCTGTTCACCCGATAACTGCGGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGCGG 635
Query 554 AAGAAGACATCATTCCTA-CTTGCAGGGAACTCGGGATTGGAATTGTAGCTTATAGTCCT 612
||||||| |||||||||| || |||||||||| ||||||||||| ||||||||||| |||
Sbjct 636 AAGAAGATATCATTCCTATCT-GCAGGGAACTTGGGATTGGAATCGTAGCTTATAGCCCT 694
Query 613 CTGGGACGGGGCTTCTTTGCTGCAGGACC-AAAGTT-CATTGAGAATATGGACAATGGTG 670
|| ||| | |||||||| || |||||||| ||| || | | |||||| |||| || | ||
Sbjct 695 CTAGGAAGAGGCTTCTTAGCAGCAGGACCCAAACTTGC-T-GAGAATCTGGAAAACGATG 752
Query 671 ACTACAGAAAGGGTTTACCGAGATTCCAGCAAGAGAACCTAGACCACAACAAGATTCTCT 730
||| ||||||| | |||| |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 753 ACTTCAGAAAGACTCTACCAAGATTCCAACAAGAAAACGTAGACCACAACAAGATTCTCT 812
Query 731 ATGAGAAGGTCAATGCAATGGCAGAGAAGAAAAGCTGTACTCCTGCACAATTAGCTTTGG 790
|||||| || ||||||||| ||||||||| | || ||||| |||||| |||| || |
Sbjct 813 TTGAGAAAGTTTCTGCAATGGCTGAGAAGAAAGGGTGCACTCCAGCACAACTAGCCTTAG 872
Query 791 CATGGGTTCATCACCAAGGAAATGATGTCTGCCCAATCCCAGGAACCTCCAAGATCAAAA 850
|||||||||||||||| ||| ||||||| ||||| || ||||||||| | ||||| |||
Sbjct 873 CATGGGTTCATCACCAGGGAGATGATGTTTGCCCCATTCCAGGAACCACTAAGATTGAAA 932
Query 851 ACCTTGATCAGAACAT-AGGAGCTTTATCTGTCAAACTCACTA-TCGAAGAGATGGCCGA 908
|||| | |||||||| || |||||| || || ||||||||| | ||||| || | ||
Sbjct 933 ACCTCAACCAGAACATTAG-AGCTTTGTCAGTAAAACTCACTCCT-GAAGAAATATCTGA 990
Query 909 GCTTGACGCCATGGG-ACATCCGGATTCTGTGAAAGGGGAAAGCT-CACCCACCT-ATAT 965
||| ||| || | | | | || || ||||||||||| ||||| | || ||| | ||
Sbjct 991 GCTCGACTCCCTTGCCAAA-CCAGAGTCTGTGAAAGGAGAAAGATACATGG-CCTCA-AT 1047
Query 966 AGTT-ACCTACAAGAATTCCGAA-ACTCCACCATTGTCTTCTTGGA 1009
|| |||| |||||| ||| || |||||||| |||||||| ||||
Sbjct 1048 -GTCCACCTTCAAGAACTCC-AACACTCCACCGTTGTCTTCCTGGA 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5