BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919890
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3... 1770 0.0
> AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor
3 subunit H1 | chr1:3607631-3610520 REVERSE LENGTH=1489
Length=1489
Score = 1770 bits (958), Expect = 0.0
Identities = 1024/1056 (97%), Gaps = 3/1056 (0%)
Strand=Plus/Plus
Query 1 TATCTCCGGAGACTATTTCAATGGCAACCATGGCTAGGTCGTTTTTACAGGCGATATCGA 60
|||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 202 TATCACCGGAGACTATTTCAATGGCAACCATGGCTAGGTCGTTTCTGCAGGCGATATCGA 261
Query 61 AGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATTGAAGGACTGGCTGTGCTAA 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 262 AGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATCGAAGGACTGGCTGTACTAA 321
Query 121 AGATGATCAAACATTGCAAGGAGTTTGCACCGACCCTTGTCACAGGACAGCTTCTTGGAC 180
|||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 322 AGATAATCAAACACTGCAAGGAGTTTTCACCGACCCTTGTCACTGGACAGCTTCTTGGAC 381
Query 181 TTGATGTTGGTAGCGTCCTTGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATG 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TTGATGTTGGTAGCGTCCTCGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATG 441
Query 241 ATGAAGAAATCGAAGCTGATGGTGCGAATTATCAGCTTGAGATGATGAGATGTCTGAGGG 300
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 442 ATGAAGAAATTGAAGCTGATGGTGCTAATTATCAGCTTGAGATGATGAGATGTCTGAGGG 501
Query 301 AGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATC 561
Query 361 AGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATTAAAAGGTGTGTGT 420
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 562 AGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATCAAGAGGTGTGTGT 621
Query 421 GCATCATATATGATCCCTCTAAAGCTGACCTAGGCGTCCTAGCTTTGAAGGCTTTGAAGC 480
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 622 GCATCATATATGATCCCTCTAAAGCTGATCTAGGCGTCTTAGCTTTGAAGGCTTTGAAGC 681
Query 481 TTTCAGATTCCTTTATGGAGTTGTACCGAGGCGGAAACTTTACTGGCGAGAAGTTGAGAG 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 682 TTTCAGATTCCTTTATGGAGTTGTACCGAGGTGGAAACTTTACTGGCGAGAAGTTGAGAG 741
Query 541 AGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAACTCTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 742 AGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAATTCTG 801
Query 601 CACTTGTCAGTGCCTTTATGACCGAACTGGAGACAGATACACCTGTCTCACAGGGCGATT 660
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 802 CCCTTGTCAGTGCCTTTATGACCGAACTGGAGACTGATACACCTGTCTCACAGGGCGATT 861
Query 661 ATGATCGTCTACACTCATCAACAACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTA 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 862 ATGATCGTCTACACTCATCAACCACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTA 921
Query 721 AATGCATGGATGATTTATCTATGGAGCAGCAGAAGTTCCAGTATTACTACCGGAACCTGT 780
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 922 AATGCATGGATGATTTATCTATGGAACAGCAAAAGTTCCAGTATTACTACCGGAACCTGT 981
Query 781 CTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAAAGA-CGGAGAACATGGCT 839
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 982 CTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAA-GAACGGAGAACATGGCT 1040
Query 840 CGGAAATCAGCTGGAGAGGAGCCTTTGCCCGAAGAGGATCCTTCAAACCCAATCTTTAAG 899
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1041 CGTAAATCAGCTGGAGAGGAGCCTTTACCAGAAGAGGATCCTTCAAACCCAATCTTTAAG 1100
Query 900 GCGATCCCTGAACCATCAAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTC 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GCGATCCCTGAACCATCTAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTC 1160
Query 960 TGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCA 1220
Query 1020 TTGCACGAAAACTGATAGCAA-GACTACCCAAGTTT 1054
|||||||| ||||||| |||| ||||||||||||||
Sbjct 1221 TTGCACGACAACTGATTGCAAAGACTACCCAAGTTT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51690937263
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5