BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919901
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10910.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3280 0.0
> AT1G10910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:3639878-3644162 FORWARD LENGTH=2213
Length=2213
Score = 3280 bits (1776), Expect = 0.0
Identities = 1940/2021 (96%), Gaps = 3/2021 (0%)
Strand=Plus/Plus
Query 21 ATGGAGACGCCACTTCTTCTTCTGGGACTTGAACTTCGATGtcctcctcatctcttcaac 80
|||||||||||| |||||| ||||||| ||||| || |||||||||||||||||||||
Sbjct 31 ATGGAGACGCCA---CTTCTTGTGGGACTCGAACTACGTTGTCCTCCTCATCTCTTCAAC 87
Query 81 actcactctcgtccctcttcctctctctcccttcccaccttatccttACGAATCCTCACT 140
|||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 88 ACTCACTCTCGTCCCTCTTCATCTCTCTCCATTCCCGCCTTATCCTTACGAATCCTCACG 147
Query 141 TCGACGGCGGCAACGACATCTACCGCCGTTGTTGAATCACCGGCGACCGTAGCAGAAGCT 200
|||||||||||||||||||| |||| ||| |||||| |||||||| |||||||||||||
Sbjct 148 CCGACGGCGGCAACGACATCTTCCGCTGTTATTGAATTACCGGCGAACGTAGCAGAAGCT 207
Query 201 CCTCGTTCTAAACGTCATTCCAATTCATATCTAACGAGGAAATCCGCCATTTCTGAAGTT 260
|||||||| ||||| |||||||||||||| || |||| |||||||||||||||||||||
Sbjct 208 CCTCGTTCCAAACGCCATTCCAATTCATACCTGGCGAGAAAATCCGCCATTTCTGAAGTT 267
Query 261 CAACGCTCCTCTGATTTTCTCTCTTCTCTGCAGAGATTAGAAAGAGTTTTGAAGGTACAA 320
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 268 CAACGCTCCTCGGATTTTCTCTCTTCTCTGCAGAGATTAGCAACAGTTTTGAAGGTACAA 327
Query 321 GATTTGAATGTAATTTTGCGTGATTTTGGAATCTCTGGAAGATGGCAGGATCTTATACAG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GATTTGAATGTAATTTTGCGTGATTTTGGAATCTCTGGAAGATGGCAGGATCTTATACAG 387
Query 381 CTCTTTGAATGGATGCAGCAACGTGGAAAAATTAGTGTTTCAACTTACAGTAGCTGCATA 440
||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 388 CTCTTTGAATGGATGCAACAACATGGAAAGATTAGTGTTTCAACTTACAGTAGCTGCATA 447
Query 441 AAGTTTGTGGGGGCAAAAAATGTCTCCAAGGCTCTAGATATATACCAAGGCATTCCAGAC 500
|||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 448 AAGTTTGTTGGGGCCAAAAATGTCTCCAAGGCTCTAGAAATATACCAAAGCATTCCAGAC 507
Query 501 GAGTCAACCAAAATCAATGTCTATATATGTAACTCCATTCTTAGTTGTCTGGTCAAGAAT 560
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GAGTCTACCAAAATCAATGTCTATATATGTAACTCCATTCTTAGTTGTCTGGTCAAGAAT 567
Query 561 GGAAAGCTTGACAGCTGCATCAAATTGTTTGATCAGATGAAGCGCGGTGGTCTGAAACCA 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 568 GGAAAGCTTGACAGCTGCATCAAATTGTTTGATCAGATGAAGCGCGATGGTCTGAAACCA 627
Query 621 GATGTGATTACGTATAACACGTTGCTTGCAGGTTGCATTAAGGTAAAAAATGGATACCCT 680
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GATGTGGTTACATATAACACGTTGCTTGCAGGTTGCATTAAGGTAAAAAATGGATACCCT 687
Query 681 AAGGCTATTGAACTCATTGGAGAGCTGCCACATAATGGAATACAAATGGACAGTGTGATG 740
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 688 AAGGCTATTGAACTCATTGGAGAGCTGCCTCATAATGGAATACAAATGGACAGTGTGATG 747
Query 741 TATGGGACTGTCTTGGCCATTTGTGCTTCAAATGGTCGATGTGAAGAAGCTGAAAACTTT 800
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 748 TATGGGACTGTCTTGGCCATTTGTGCTTCAAATGGTCGAAGTGAAGAAGCTGAAAACTTT 807
Query 801 ATCCAGCAGATGAAAGTTGAAGGTCATTCGCCCAACATATATCATTACAGCTCCTTGCTC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 808 ATCCAGCAGATGAAAGTTGAAGGTCATTCGCCCAACATATATCATTACAGCTCTTTACTC 867
Query 861 AATTCGTATTCTTGGAAAGGAGATTACAAGAAAGCTGATGAGCTGATGACCGAGATGAAA 920
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 AATTCATATTCTTGGAAAGGAGATTACAAGAAAGCTGATGAGCTGATGACCGAGATGAAA 927
Query 921 TCAATAGGATTAGTGCCAAACAAGGTGATGATGACAACTTTACTAAAGGTTTATATCAAA 980
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 928 TCAATAGGATTAGTGCCAAACAAGGTGATGATGACAACTTTACTTAAGGTTTATATCAAA 987
Query 981 GGAGGCTTGTTTGATAGATCAAGAGAATTACTTTCTGAACTTGAATCTGCAGGGTACGCC 1040
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 988 GGAGGGTTGTTTGATAGATCAAGAGAATTACTTTCTGAACTTGAATCTGCTGGGTACGCC 1047
Query 1041 GAGAACGAGATGCCATACTGTATGTTGATGGATGGTCTTTCAAAGGCGGGGAAGTTAGAA 1100
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1048 GAGAACGAGATGCCGTATTGTATGTTGATGGATGGTCTTTCAAAGGCGGGAAAGTTAGAA 1107
Query 1101 GAAGCGAGATCAATCTTTGATGATATGAAAGGGAAAGGTGTTAAATCCGATGGCTATGCC 1160
|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1108 GAAGCGAGGTCAATCTTTGATGATATGAAAGGGAAAGGTGTTAGATCTGATGGCTATGCC 1167
Query 1161 AACAGCATCATGATATCTGCTTTATGTCGAAGTAAGCGTTTTGAGGAGGCAAAAGAACTG 1220
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1168 AACAGCATCATGATATCTGCTTTATGTCGAAGTAAGCGTTTTAAGGAGGCAAAAGAACTG 1227
Query 1221 TCAAGGGACTCTGAAACCACTTATGAAAAATGCGACTTGGTAATGTTAAACACAATGCTC 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TCAAGGGACTCTGAAACCACTTATGAAAAATGCGACTTGGTAATGTTAAACACAATGCTC 1287
Query 1281 TGTGCCTATTGCAGAGCAGGAGAGATGGAAAGTGTTATGCGGATGATGAAGAAAATGGAT 1340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1288 TGTGCCTATTGCAGAGCAGGAGAGATGGAAAGTGTTATGCGAATGATGAAGAAAATGGAT 1347
Query 1341 GAGCGAGCCGTTATTCCCGATTATAATACTTTCCATATCTTGATCAAATATTTCATCAAG 1400
|||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1348 GAGCAAGCCGTTAGTCCCGACTATAATACTTTCCATATCTTGATCAAATACTTCATCAAG 1407
Query 1401 GAGAAATTGCACCTGCTTGCGTACCAAACCACACTTGACATGCACAGCAAAGGCCACAGG 1460
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1408 GAGAAATTGCACCTGCTTGCGTACCAAACCACACTGGACATGCACAGCAAAGGCCACAGG 1467
Query 1461 CTTGAGGAGGAACTTTGCTCATCCTTGATTTATCATCTCGGCAAGATTAGAGCTCCCTCG 1520
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 1468 CTTGAGGAGGAACTTTGCTCGTCCTTGATATATCATCTCGGCAAGATTAGAGCTCAAGCG 1527
Query 1521 GAAGCATTCTCAGTCTACAATATGTTGCGATACAGCAAAAGAACTATCTGCAAAGAGCTC 1580
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 GAAGCATTCTCAGTCTACAATATGTTGCGATACAGCAAAAGAACTATCTGCAAAGAGCTG 1587
Query 1581 CATGAGAAAATTCTTCACATTCTAATCCATGGGAATCTCCTAAAAGACGCATACATTGTA 1640
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1588 CATGAGAAAATTCTTCACATTCTAATCCAAGGGAATCTCCTAAAAGATGCATACATTGTA 1647
Query 1641 GTGAAGGACAATGCAAAGATGATCTCACAGCCTACTTTAAAGAAATTTGGCAGAGCTTTT 1700
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GTGAAGGACAATGCGAAGATGATCTCACAGCCTACTTTAAAGAAATTTGGCAGAGCTTTT 1707
Query 1701 ATGATCTCGGGTAATATTAATTTAGTGAATGATGTTCTGAAAGTCTTGCATGGTTCTGGC 1760
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1708 ATGATCTCGGGTAATATTAATTTAGTGAATGATGTTCTGAAAGTATTGCATGGTTCTGGC 1767
Query 1761 CACAAAATCGATCAGGTTCAGTTTGAGATTGCAATTTCTCGATACATTTCGCAGCCCGAT 1820
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1768 CACAAAATCGATCAGGTTCAGTTTGAGATTGCGATTTCTCGATACATTTCGCAGCCCGAT 1827
Query 1821 AAAAAGGAATTACTTCTTCAACTTCTACAATGGATGCCTGGTCAAGGATACATTGTTGAC 1880
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1828 AAAAAGGAATTGCTTCTTCAACTTCTACAATGGATGCCTGGTCAAGGATATGTTGTTGAC 1887
Query 1881 TCCTCCACAAGAAACCTCATTCTCAAGAACTCTCATATGTTTGGTCGGCTACTCATTGCA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 TCCTCCACAAGAAACCTCATTCTCAAGAACTCTCATATGTTTGGTCGGCTACTCATTGCA 1947
Query 1941 GAGATCTTGTCAAAGCATCATGTCGCTTCAAGACCGCCCATAAAATCACGATCAGAGCCA 2000
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
Sbjct 1948 GAGATCTTGTCAAAGCATCATGTCGCTTCAAGACCGATGATAAAATCACGACCAGAGCAA 2007
Query 2001 AAATTTAGAAGTACATAAGAATGTAATTTTTCTGGTTCTTT 2041
||||||||| ||| |||||||||||| ||||||| ||||||
Sbjct 2008 AAATTTAGATGTAAATAAGAATGTAAATTTTCTGTTTCTTT 2048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101154098175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5