BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919906
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10970.1 | Symbols: ZIP4, ATZIP4 | zinc transporter 4 precur... 1925 0.0
AT1G60960.1 | Symbols: IRT3, ATIRT3 | iron regulated transporte... 913 0.0
> AT1G10970.1 | Symbols: ZIP4, ATZIP4 | zinc transporter 4 precursor
| chr1:3665087-3667139 REVERSE LENGTH=1547
Length=1547
Score = 1925 bits (1042), Expect = 0.0
Identities = 1214/1294 (94%), Gaps = 23/1294 (2%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGAAACTCTTGTTCCCATGATCATCGTCGATGTTCTTTGGAAACTGTTTCCT 60
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 183 GAAGAAGAATAAACTCTTGTTCCCATGATCTTCGTCGATGTTCTTTGGAAATTGTTTCCT 242
Query 61 CTATACTCGTTTGGATCAGAAAGAGATTCTCTCTCAGAGTCCATTTTGCAGATAATTCCC 120
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 243 CTATACTCGTTTGGATCAGGAAGAGACTCTCTCTCAGAGTCCATTTTGCAGATCATTCCC 302
Query 121 GAGACAATGGCTTCTTCTACCACTAAAATCCTCTGTGATGCCGGTGATTCAGACCTCTGT 180
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 303 GAGACAATGGCTTCTTCTACCACTAAAATCCTCTGTGATGCTGGCGAATCAGACCTCTGT 362
Query 181 AGAGACGATTCAGCTGCATTTCTGCTCAAATTTGTAGCCATTGCCTCCATTCTACTAGCT 240
||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 363 AGAGACGATTCTGCTGCATTTCTCCTTAAGTTTGTAGCCATTGCCTCCATTCTACTAGCT 422
Query 241 GGAGCTGCTGGTGTAGCCATACCTCTCATTGGCAGGAACCGTCGGTTTCTTCAAACTGAG 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 423 GGAGCTGCTGGTGTAGCCATACCTCTCATTGGCAGGAACCGCCGGTTTCTTCAAACCGAG 482
Query 301 GGAAATCTCTTTGTAGCTGCTAAAGCCTTTGCAGCTGGTGTCATACTCGCCACTGGATTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 483 GGAAATCTCTTTGTAGCTGCTAAAGCCTTTGCAGCTGGTGTCATACTCGCCACCGGCTTT 542
Query 361 GTCCATATGCTTGCAGGCGGCACGGAAGCTCTGAGTAATCCGTGTTTACCGGATTATCCG 420
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 543 GTCCATATGCTTGCAGGTGGCACAGAAGCTCTGAGTAATCCGTGTTTACCGGATTTTCCG 602
Query 421 TGGTCTAAGTTTCCCTTTCCCGGTTTCTTTGCTATGGTGGCTGCTTTAGTTACTCTGCTT 480
||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||
Sbjct 603 TGGTCTAAGTTTCCCTTTCCCGGGTTCTTTGCAATGGTTGCTGCTTTAGCTACTCTGCTT 662
Query 481 GTGGATTTCATGGGGACTCAGTACTATGAGAGGAAGCAAGAGAGGAATCAGGCTGCTAGT 540
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 663 GTTGATTTCATGGGGACACAGTACTATGAGAGGAAGCAAGAGAGGAATCAGGCTGCTACT 722
Query 541 GAAACCGCTGTTGTTGAGCCTGGTCGTGAAGAGACTGCTGTTGTTCCCGTGGTTGGGGAA 600
||| |||| | | ||||| ||||||||| |||||||||||| ||||||||||||
Sbjct 723 GAAGCCGC------T--G-CTGGTAGTGAAGAGATTGCTGTTGTTCCTGTGGTTGGGGAA 773
Query 601 AGTGTCAACGATAATAAAGTATTTGGTGAAGAAGACGGTGGTGGGATTCACATTGTTGGC 660
|| || | |||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 774 AGAGTGACCGATAATAAAGTGTTTGGTGAAGAAGACGGTGGCGGGATTCACATTGTCGGC 833
Query 661 ATTCATGCTCATGCTGCTCACCATAGGCACAGTCACTCTAATAGCCATGGTACATGTGAT 720
|||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 834 ATTCGTGCACATGCTGCTCACCATAGGCATAGTCACTCTAATAGTCATGGTACATGTGAT 893
Query 721 GGACATGCTCATGGACATTCACACGGACATGGACATGGACATGTGCACGGGAATTCAGAT 780
||||||||||||||||||| ||| || |||||| | |||||||||||||||||
Sbjct 894 GGACATGCTCATGGACATT--CAC--AC--GGACAT----A--TGCACGGGAATTCAGAT 941
Query 781 GTTGAAAATGGAGCTAGGCATGTTGTTGTTTCTCAGATATTGGAGCTTGGGATTGTGTCG 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 942 GTTGAAAATGGAGCTAGGCATGTTGTTGTTTCTCAGATATTGGAGCTCGGGATTGTGTCG 1001
Query 841 CACTCAATCATCATCGGTTTATCCCTCGGAGTATCGCAGTCTCCATGCACGATCAGGCCT 900
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1002 CACTCAATCATCATCGGTTTATCCCTGGGGGTATCACAGTCTCCATGCACGATCAGGCCT 1061
Query 901 CTCATTGCAGCTCTGTCATTTCACCAGTTCTTTGAAGGATTTGCGCTCGGAGGCTGCATC 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTATTGCAGCTCTGTCATTTCACCAGTTCTTTGAAGGATTTGCGCTCGGAGGCTGCATC 1121
Query 961 TCTCAGGCACAGTTCAGGAACAAATCAGCAACCATAATGGCTTGCTTCTTCGCGCTAACC 1020
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1122 TCTCAGGCACAGTTCAGGAACAAATCAGCGACCATAATGGCTTGCTTCTTTGCGCTAACC 1181
Query 1021 ACACCGAT-AGGGATCGGAATTGGAACAGCAGTGGCCTCGTCTTTCAACTCGCATAGCCC 1079
||||| || ||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1182 ACACC-ATTAGGGATCGGGATTGGAACTGCAGTGGCCTCATCTTTCAACTCGCATAGCCC 1240
Query 1080 TGGAGCTTTGGTCACCGAGGGGATACTGGACTCGCTGTCAGCTGGGATACTGGTGTACAT 1139
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1241 TGGAGCTTTGGTCACTGAGGGGATACTGGACTCGCTGTCAGCTGGAATACTGGTGTACAT 1300
Query 1140 GGCTCTGGTGGACCTCATCGCAGCTGATTTTCTGAGTAAGAGGATGAGTTGTAATGTGAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1301 GGCTCTGGTGGACCTCATCGCAGCTGATTTTCTGAGTAAGAGGATGAGTTGTAATTTGAG 1360
Query 1200 GCTTCAAGTTGTGTCTTATATAATGTTGTTCCTTGGAGCTGGACTTATGTCTGCTCTCGC 1259
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GCTTCAAGTTGTGTCTTATGTAATGTTGTTCCTTGGAGCTGGACTTATGTCTGCTCTCGC 1420
Query 1260 CGTTTGGGCTTAGCTTTTAGATTACATATTATCT 1293
| ||||||||||||| ||||||||||||||||||
Sbjct 1421 CATTTGGGCTTAGCTCTTAGATTACATATTATCT 1454
> AT1G60960.1 | Symbols: IRT3, ATIRT3 | iron regulated transporter
3 | chr1:22445310-22447214 REVERSE LENGTH=1532
Length=1532
Score = 913 bits (494), Expect = 0.0
Identities = 1053/1309 (80%), Gaps = 94/1309 (7%)
Strand=Plus/Plus
Query 25 ATGATCATCGTCGATGTTCTTTGGAAACTGTTTCCTCTATACTCGTTTGGATCAGAAAGA 84
||| || ||||||||||||||||||||||| |||||||||||| ||| |||||||||| |
Sbjct 155 ATGTTCTTCGTCGATGTTCTTTGGAAACTGGTTCCTCTATACTTGTTCGGATCAGAAACA 214
Query 85 GA-T-TCTCT---C-TCAGAGTCCATTTTGCAGATAATTCCCGAGACAATGGCTTCTTCT 138
| | ||||| | |||||||||||||||||||| |||| ||| |||||||| || ||
Sbjct 215 AAGTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCTGAGGCAATGGCTGCTACT 274
Query 139 ACCA-CTAAAATCCTCTGTGATGCCGGTGATTCAGACCTCTGTAGAGACGATTCAGCTGC 197
|| |||| |||| || |||| | || ||||| || ||| | || ||||| |||||
Sbjct 275 -TCATCTAACGTCCTTTGCAATGCTAGCGAGTCAGATCTTTGTCGTGATGATTCCGCTGC 333
Query 198 ATTTCTGCTCAAATTTGTAGCCATTGCCTCCATTCTAC-TAGCTGGAGCTGCTGGTGTAG 256
|||||| || ||||||||||||||||| || ||||| | ||||||||||||||||||||
Sbjct 334 ATTTCTACTTAAATTTGTAGCCATTGCTTCGATTCT-CTTAGCTGGAGCTGCTGGTGTAA 392
Query 257 CCATACCTCTCATTGGCAGGAACCGTCGGTTT-CTTCAAACTGAGGGAAATCTCTTTGTA 315
| ||||| ||||||||||||||||||| |||| ||||||||||| || |||||||||||
Sbjct 393 CTATACCACTCATTGGCAGGAACCGTC-GTTTCCTTCAAACTGATGGTAATCTCTTTGT- 450
Query 316 G-CTGCTAAAGCCTTTGCAGCTGGTGTCATACTCGCCACTGGATTTGTCCATATGCTT-G 373
| |||||||||| |||||||||||||| || |||||||| || ||||| |||||| || |
Sbjct 451 GACTGCTAAAGCTTTTGCAGCTGGTGTGATTCTCGCCACGGGTTTTGTTCATATG-TTGG 509
Query 374 CAGGCGGCACGGAAGCTCTG-AGTAATCCGTGTTTACCGGATTAT-CCGTGGTCTAAGTT 431
| || |||||||||||| || || || ||||| |||||||||| | || |||||||||||
Sbjct 510 CGGGTGGCACGGAAGCTTTGAAG-AACCCGTGCTTACCGGATT-TCCCTTGGTCTAAGTT 567
Query 432 TCCCTTTCCC-GGTTTCTTTGCTATGGTGGCTGCTTTAG-TTACTCTGCTTGTGGATTTC 489
| |||||||| || |||||||| ||| | |||||||| | | |||||| |||||||||||
Sbjct 568 T-CCTTTCCCGGGATTCTTTGCGATGATTGCTGCTTT-GATCACTCTGTTTGTGGATTTC 625
Query 490 ATGGGGACTCAGTACTATGAGA-GGAAGCAAGAGAGGAATCAGGCTGCTAGTGAAACCGC 548
|||||||||||||||||||| | |||||||||||||| | || || ||||| |
Sbjct 626 ATGGGGACTCAGTACTATGA-ACGGAAGCAAGAGAGGGA--AG-CT---AGTGA----G- 673
Query 549 TGTTGTTGAGCC-T--GGTCGTGAAGAG--ACTGC-T---GTTGTTCCCGTGGTTGGGGA 599
| | ||||| || | || |||||| | || | | ||||||||| || |||| ||
Sbjct 674 TCT-GTTGAACCGTTTGGCCGTGAACAATCACCGGGTATTGTTGTTCCCATGATTGGAGA 732
Query 600 AAGTGTCAACGA-TAAT---AAAGTATTTGGTGAAGAAGACGGTGGTGGGATTCACATTG 655
| | | ||||| | || ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 733 A-G-G--AACGAATGATGGGAAAGTGTTTGGTGAAGAAGACAGTGGTGGGATTCACATTG 788
Query 656 TTGGCATTCATGCTCATGCTGCTCACCATAGGCACAGTCA-C-TC-TAAT-A-GC--CAT 708
||||||||||||||||||||||||| ||||| || ||||| | || | | | | |||
Sbjct 789 TTGGCATTCATGCTCATGCTGCTCATCATAGACATAGTCATCCTCCTGGTCATGATTCAT 848
Query 709 G-GTA---CAT-GTGA--TGGACAT-GCTCATGGACAT--TCA----CACGGACATGGAC 754
| | | || || | | ||||| | ||||| ||| ||| ||||| |||||||
Sbjct 849 GTGAAGGACACAGTAAAATCGACATTGGTCATGCTCATGCTCATGGGCACGGGCATGGAC 908
Query 755 ATGGACATGT----G--CACGGGAATTCAGATGTTGAAAATGGAGCTAGGCATGTTGTTG 808
| ||||||| | |||||| || |||| || ||||||||||||||| | ||||
Sbjct 909 ACGGACATGGACACGTACACGGGGGTTTGGATGCTGTTAATGGAGCTAGGCATATCGTTG 968
Query 809 TTTCTCAGATAT-TGGAGCTTGGGATTGTGTCGCACTCAATCATCATCGGTTTATCCCTC 867
|||||||| | | |||||||||| |||||||| || || || ||||||||| |||||||
Sbjct 969 TTTCTCAGGT-TCTGGAGCTTGGAATTGTGTCACATTCCATAATCATCGGTCTATCCCTT 1027
Query 868 GGAGTATCGCAGTCTCCATGCACGATCAGGCCTCTCATTGCAGCTCTGTCATTTCACCAG 927
|||||||| |||||||| ||||| ||| ||||||| || ||||| || || || || ||
Sbjct 1028 GGAGTATCTCAGTCTCCTTGCACAATCCGGCCTCTAATCGCAGCACTATCCTTCCATCAA 1087
Query 928 TTCTTTGAAGGATTTGCGCTCGGAGGCTGCATCTCTCAGGCACAGTTCAGGAACAAATCA 987
||||||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct 1088 TTCTTTGAAGGATTTGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCA 1147
Query 988 GCAACCATAATGGCTTGCTTCTTCGCGCTAACCACACCGATAGGGATCGGAATTGGAACA 1047
|| |||||||||||||| || ||||| || || || |||||||||||||| ||||||||
Sbjct 1148 GCGACCATAATGGCTTGTTTTTTCGCCCTCACAACCCCGATAGGGATCGGGATTGGAACC 1207
Query 1048 GCAGTGGCCTCGTCTTTCAACTCGCATAGCC-CTGGAGCTTTGGTCACCGAGGGGATACT 1106
|||||||| ||||||||||| || || || | ||||| |||||||| || || || ||
Sbjct 1208 GCAGTGGCGTCGTCTTTCAATTCTCACAGTGTC-GGAGCATTGGTCACTGAAGGTAT-CT 1265
Query 1107 -GGACTCGCTGTCAGCTGGGATACTGGTGTACATGGCTCTGGTGGACCTCATCGCAGCTG 1165
||||||||| ||||| || || || |||||||||||| | ||||| ||||| || ||||
Sbjct 1266 TGGACTCGCTCTCAGCCGGAATTCTTGTGTACATGGCTTTAGTGGATCTCATAGCTGCTG 1325
Query 1166 ATTTTCT-GAGTA-AGAGGATGAGTTGTAA-TGTGAGGCTTCAAGTTGTGTCTTATATAA 1222
|||| || ||||| | | ||||| ||||| | | ||||||||| |||| |||||| |||
Sbjct 1326 ATTT-CTTGAGTACAAAA-ATGAGGTGTAACTTT-AGGCTTCAAATTGTATCTTATGTAA 1382
Query 1223 TGTTGTTCCTTGGAGCTGGACTTATGTCTGCTCTCGCCGTTTGGGCTTA 1271
|||||||||| ||||||||||| |||||| |||| ||| ||||||||||
Sbjct 1383 TGTTGTTCCTAGGAGCTGGACTCATGTCTTCTCTTGCCATTTGGGCTTA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5