BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919908
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11000.1 | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO f... 2883 0.0
> AT1G11000.1 | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO
family protein | chr1:3671756-3675979 REVERSE LENGTH=1971
Length=1971
Score = 2883 bits (1561), Expect = 0.0
Identities = 1699/1764 (96%), Gaps = 15/1764 (1%)
Strand=Plus/Plus
Query 2 GAAAA-TCTCCTCGCCGGAGATGGAGCATATGATGAAAGAAGGGAGGTCT-TTGGCAGAA 59
||||| | ||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 52 GAAAAGT-TCCTCGCCGGAGATGGAGCATATGATGAAAGAAGGAAGGTCTCTT-GCAGAG 109
Query 60 ACGCCGACTTACTCTGTTGCTTCGGTTGTTACTGTTTTGGTCTTTGTTTGCTTTCTCGTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 ACGCCGACTTACTCTGTTGCTTCGGTTGTTACTGTTTTGGTCTTTGTTTGCTTTCTCGTT 169
Query 120 GAACGCGCCATTTACAGATTTGGAAAGTGGTTAAAGAAGACTAGAAGAAAGGCACTTTTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GAACGCGCCATTTACAGATTTGGAAAGTGGTTAAAGAAGACTAGAAGAAAGGCACTTTTT 229
Query 180 ACTTCACTTGAGAAAATGAAAGAGGAGTTGATGTTGCTGGGACTTATATCACTGCTCTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 230 ACTTCACTTGAGAAAATGAAAGAGGAGTTGATGTTGCTGGGACTTATATCACTTCTGTTG 289
Query 240 TCACAAAGCGCAAGATGGATTTCAGAAATCTGTGTTAACTCTTCCCTTTTCAATAGTAAA 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TCACAAAGCGCGAGATGGATTTCAGAAATCTGTGTTAACTCTTCCCTTTTCAATAGTAAA 349
Query 300 TTCTACATTTGCTCTGAAGAGGACTATGGAATCCATAAGAAAGTTCTTCTGGAACACACC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCTACATTTGCTCTGAAGAGGACTATGGAATCCATAAGAAAGTTCTTCTGGAACACACC 409
Query 360 TCTTCTACTAACCAGAGTTCCTTACCTCATCATGGAATGCATGAAGCCTCTCATCAATGT 419
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 410 TCTTCTACAAACCAGAGCTCCTTACCTCATCATGGAATACATGAAGCCTCTCATCAATGT 469
Query 420 GGTCATGGCCGTGAACCATTTGTATCCTATGAGGGACTCGAGCAACTCCTAAGATTCTTA 479
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 470 GGTCATGGCCGTGAACCATTTGTGTCGTATGAGGGACTCGAGCAACTCCTAAGATTCTTA 529
Query 480 TTTGTCCTGGGTATTACTCATGTTCTGTATAGTGGCATTGCCATTGGTTTAGCCATGAGC 539
|| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 530 TTCGTCCTGGGTATCACTCATGTTCTATACAGTGGCATTGCCATTGGTTTAGCCATGAGC 589
Query 540 AAGATTTACAGTTGGAGAAAATGGGAAGCCCAAGCGATCATAATGGCTGAATCTGATATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 590 AAGATTTACAGTTGGAGAAAATGGGAAGCCCAAGCGATCATAATGGCTGAATCAGATATC 649
Query 600 CATGCAAAGAAGACCAAGGTGATGAAGCGTCAGTCTACATTTGTCTTCCATCATGCCTCT 659
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 650 CACGCAAAGAAGACCAAGGTGATGAAGCGTCAGTCTACATTTGTTTTCCATCATGCCTCT 709
Query 660 CATCCTTGGAGTAACAATCGTTTTCTCATCTGGATGCTCTGTTTCCTGCGGCAGTTTAGA 719
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 710 CATCCTTGGAGTAACAATCGTTTTCTCATTTGGATGCTTTGTTTCCTGCGGCAATTTAGA 769
Query 720 GGCTCCATACGAAAGTCTGACTACTTCGCTCTTCGGTTAGGTTTCCTCACTAAACATAAT 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 770 GGCTCCATACGAAAGTCTGACTACTTCGCACTTCGGTTAGGTTTCCTCACTAAACATAAT 829
Query 780 TTGCCATTTACATATAACTTCCATATGTATATGGTACGGACGATGGAAGATGAGTTTCAT 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TTGCCATTTACATACAACTTCCATATGTATATGGTACGGACGATGGAAGATGAGTTTCAT 889
Query 840 GGCATTGTTGGAATTAGCTGGCCACTTTGGGTTTACGCTATAGTATGCATCTGCATAAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGCATTGTTGGAATTAGCTGGCCACTTTGGGTTTACGCTATAGTATGCATCTGCATAAAT 949
Query 900 GTTCATGGCCTGAATATGTACTTTTGGATATCATTCATCCCTGCCATTCTTGTCATGTTG 959
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 950 GTTCATGGCCTGAATATGTACTTTTGGATATCATTCGTTCCTGCCATTCTTGTCATGTTG 1009
Query 960 GTTGGAACCAAACTTGAGCACGTTGTCTCCAAGCTTGCTCTCGAGGTTAAGGAGCAGCAG 1019
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GTTGGAACCAAACTTGAGCATGTTGTCTCCAAGCTTGCTCTCGAGGTTAAGGAGCAGCAG 1069
Query 1020 ACAGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGACTCTTCTGGTTTGGGAAA 1079
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1070 ACAGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGGCTCTTCTGGTTTGGGAAA 1129
Query 1080 CCAGAGATTCTGCTACGGTTGATACAATTTATCATTTTTCAGAATGCATTTGAAATGGCA 1139
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CCAGAAATTCTGCTACGGTTGATACAATTTATCATTTTTCAGAATGCATTTGAAATGGCA 1189
Query 1140 ACATTCATCTGGTTCTTGTGGGGAATCAAGGAAAGATCTTGTTTCATGAAGAACCATGTG 1199
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1190 ACATTCATCTGGTTCTTGTGGGGAATCAAGGAAAGATCTTGCTTCATGAAGAACCATGTG 1249
Query 1200 ATGATATCAAGCAGACTGATTTCTGGGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACT 1259
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 ATGATATCAAGCCGGCTAATTTCTGGGGTTCTCGTTCAGTTCTGGTGTAGTTATGGCACT 1309
Query 1260 GTGCCCCTCAATGTAATTGTCACTCAGATGGGATCTCGGCACAAGAAAGCTGTGATAGCA 1319
||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1310 GTGCCTCTCAATGTAATCGTTACTCAGATGGGATCTCGGCATAAGAAAGCTGTGATAGCA 1369
Query 1320 GAGAGCGTAAGAGACTCACTTCACAGCTGGTGCAAGAGAGTGAAAGAGAGGTCTAAGCAC 1379
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1370 GAGAGCGTAAGAGACTCACTTCACAGTTGGTGCAAGAGAGTGAAAGAGAGGTCTAAGCAC 1429
Query 1380 ACGAGATCAGTGTGTTCCCTTGACACAGCAACAATAGACGAGAGAGACGAGATGACAGTG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ACGAGATCAGTGTGTTCCCTTGACACAGCAACAATAGACGAGAGAGACGAGATGACAGTG 1489
Query 1440 GGGACATTGTCTAGGAGCTCATCGATGACTTCACTGAATCAGATTACCATAAACTCCATA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGGACATTGTCTAGGAGCTCATCGATGACTTCACTGAATCAGATTACCATAAACTCCATA 1549
Query 1500 GACCAAGCAGAGTCCATATTTGGAGCAGCAGCTTCTTCGAGCAGTCCTCAAGATGGGTAT 1559
|||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 1550 GACCAAGCAGAGTCTATATTCGGAGCAGCAGCTTCATCCAGCAGTCCTCAAGATGGATAC 1609
Query 1560 ACCTCGAGGGTGGAAGAATATCTGTCTGAAACATACAATAACATTGGTTCGATGCCGCCT 1619
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1610 ACGTCGAGGGTGGAAGAATATCTGTCTGAAACATACAATAACATCGGTTCGATACCGCCT 1669
Query 1620 CTAAACGAtgagattgagattgagattgaaagtgaagaagataatggaaggagagaga-g 1678
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |
Sbjct 1670 TTAAACGATGAGATTGAGATTGAGATTGAAGGTGAAGAAGATAATGGAGGGAGAG-GAAG 1728
Query 1679 tgggagtgaggagaaTAA---TG--G----AGAAACACTTCTTGAGTTGTTTAGGAGGAC 1729
||||||||| |||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1729 TGGGAGTGATGAGAATAACGGTGATGCTGGAGAAACACTTCTTGAGTTGTTTAGGAGGAC 1788
Query 1730 TTGATCTTGTTTCTACTTTTAGAA 1753
|||||||||||||| |||||||||
Sbjct 1789 TTGATCTTGTTTCTGCTTTTAGAA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86746541760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5