BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919915
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11090.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1602 0.0
> AT1G11090.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:3702608-3703779 FORWARD LENGTH=1172
Length=1172
Score = 1602 bits (867), Expect = 0.0
Identities = 957/1001 (96%), Gaps = 3/1001 (0%)
Strand=Plus/Plus
Query 14 CACTCCTCGATGTCTGATCACCAGCTTGAAACAGAGATCAACTTCTGGGGAGAGACGTCA 73
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 39 CACTCCTCGATGTCTGATCAACAGCTTGAAACAGAGATCAACTTCTGGGGAGAGACTTCA 98
Query 74 GAAGAAGACTACTTCAATCTCAAAGGCATCATCGGTTCCAAATCTTTCTTCACTTCCCCT 133
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 99 GAAGAAGATTACTTTAATCTCAAAGGCATCATCGGCTCCAAATCTTTCTTCACTTCCCCT 158
Query 134 CGAGGTCTCAACCTCTTCACTCGTTCATGGCTTCCCTCTTCCTCTTCCCCGCCACGTGGT 193
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 159 CGAGGTCTCAACCTCTTCACTCGTTCATGGCTTCCCTCTTCCTCTTCTCCGCCACGTGGT 218
Query 194 CTCATCTTCATGGTCCATGGCTATGGCAATGACGTCAGCTGGACTTTCCAGTCCACTCCC 253
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 219 CTCATCTTCATGGTCCATGGCTACGGCAATGACGTCAGCTGGACTTTCCAGTCCACTCCC 278
Query 254 ATCTTTCTCGCTCAGATGGGTTTCGCTTGCTTTGCTCTCGACATTGAAGGTCATGGCCGA 313
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 279 ATTTTTCTTGCTCAGATGGGTTTCGCTTGCTTTGCTCTCGACATCGAAGGTCATGGCCGA 338
Query 314 TCTGACGGCGTCCGCGCCTATGTTCCTTCCGTAGATCTCGTCGTCGATGACATCATCTCT 373
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 339 TCTGACGGTGTCCGCGCCTATGTTCCCTCCGTAGATCTAGTCGTCGATGACATCATCTCT 398
Query 374 TTCTTCAATTCGATTAAGCAAAACCCTAAGTTTCAAGGCTTACCCCGGTTTCTCTTCGGA 433
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 399 TTCTTTAATTCGATTAAGCAAAACCCTAAATTTCAAGGCTTACCTCGGTTTCTCTTCGGA 458
Query 434 GAATCAATGGGCGGTGCGATTTGTCTTTTGATCCATTTCGCTGATCCGGTAGGGTTCGAT 493
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 459 GAATCAATGGGCGGTGCGATTTGTCTTTTGATCCAATTCGCTGATCCGTTAGGGTTTGAT 518
Query 494 GGAGCGGTTTTGGTTGCTCCCATGTGTAAAATCTCCGATAAGGTAAGACCTAAATGGCCG 553
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 519 GGAGCGGTTTTGGTTGCTCCCATGTGTAAAATCTCGGACAAGGTGAGACCTAAATGGCCG 578
Query 554 ATTGATCAGTTTCTGATTATGATCTCAAGATTCTTGCCGACTTGGGCGATTGTTCCCACA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 579 GTTGATCAGTTTCTGATTATGATCTCAAGATTCTTGCCGACTTGGGCGATTGTTCCGACG 638
Query 614 GAGGATCTGGTGGAGAAATCGATCAAAGTTGAAGAGAAGAAACCGATTGCGAAGAGGAAC 673
|| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 639 GAAGATCTGTTGGAGAAGTCGATCAAAGTTGAAGAGAAGAAACCGATTGCCAAGAGGAAT 698
Query 674 CCGATGAGGTACAATGAGAAACCGAGGTTAGGTACAGTGATGGAGCTACTTAGGGTTACG 733
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 699 CCGATGAGGTACAATGAGAAACCGCGGTTAGGTACAGTGATGGAGCTACTTAGGGTTACT 758
Query 734 GATTACTTAGGGAAGAAGCTAAAAGATGTTAGCATTCCTTTCATTGTTGTGCACGGAAGT 793
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 759 GATTACTTAGGGAAGAAGCTAAAAGATGTTAGCATTCCCTTCATTATTGTGCACGGAAGT 818
Query 794 GCAGATGCTGTGACCGATCCTGATGTGAGCAGAGAGTTGTACGAACATGCTAAGAGCAAA 853
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 819 GCAGATGCTGTGACTGATCCTGAAGTGAGCAGAGAGTTGTACGAACATGCTAAGAGCAAA 878
Query 854 GACAAGACATTGAAGATCTATGAAGGGATGATGCATTCGATGTTGTTCGGTGAACCCGAC 913
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 879 GATAAGACATTGAAGATCTATGACGGGATGATGCATTCGATGTTGTTCGGTGAACCCGAC 938
Query 914 AACAACATTGAGATTGTTCGTAAAGATATTGTTAGTTGGTTGAATGATAGATGTGGTGGT 973
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 939 GACAACATTGAGATTGTTCGTAAAGATATTGTTAGCTGGTTGAATGATAGATGTGGTGG- 997
Query 974 GGAGACAAAACCAAAACCTAGGTTTGAATTCATTGTTTGTC 1014
|||||||||||||||| ||||||||||||||||||||||
Sbjct 998 --AGACAAAACCAAAACCCAGGTTTGAATTCATTGTTTGTC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5