BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919936
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61350.1 | Symbols: | ARM repeat superfamily protein | chr1... 1524 0.0
> AT1G61350.1 | Symbols: | ARM repeat superfamily protein | chr1:22633882-22635894
FORWARD LENGTH=2013
Length=2013
Score = 1524 bits (825), Expect = 0.0
Identities = 1411/1691 (83%), Gaps = 52/1691 (3%)
Strand=Plus/Plus
Query 43 GAATCAATATCTTCTTTAATCTCACTATCACACTCAATCAAATCCTTCACCGTGAAATGG 102
||| |||||||||| || || ||||| || ||||||||||||||||||| | | ||||||
Sbjct 272 GAAGCAATATCTTCATTGATTTCACTCTCTCACTCAATCAAATCCTTCAACATCAAATGG 331
Query 103 CAATTGATACGAACCAAGCTCGAAGAACTCTACTCTGGAATC-ACTTC-CTTCGAGAATC 160
||| | ||| ||||||| ||| |||| || |||||||| || | ||| || ||| ||||
Sbjct 332 CAACTCATAAGAACCAAACTCCAAGAGCTTTACTCTGGTCTCGA-TTCTCTCCGA-AATC 389
Query 161 TAAATTC-CGACTTCGACCCATCTCTCTCCACCTTGAT-TAACGCCATTCTAGAT-TCTC 217
| ||||| || ||||||||||||||||| | ||| || | |||||||||| || ||||
Sbjct 390 TCAATTCTGGA-TTCGACCCATCTCTCTCAAGCTTAATCT-CCGCCATTCTA-ATCTCTC 446
Query 218 TCCAAGA-ATCTCACGATCTTGCTTCACGATGC-TTGAATGTCTCCTTTAGCGGGAAGC- 274
|| |||| | || ||||||| ||| | || ||| || || |||||||| || || ||||
Sbjct 447 TCAAAGACA-CTTACGATCTCGCTACTCGCTGCGTT-AACGTCTCCTTCAGTGGTAAGCT 504
Query 275 TCTTGATGCAGAGTGATTTAGATGTTATGTCTGGGAAATTCGATCGCCATGTGAGGAATC 334
|| ||||||| || ||||||||||||||| | |||||||||||| | ||| ||||||||
Sbjct 505 TC-TGATGCAAAGCGATTTAGATGTTATGGCGGGGAAATTCGATGGACATACGAGGAATC 563
Query 335 TTTCTCGGATTTACTCTGCTGAGATTCTCAGACATGGGTTCGCGATTGTTGT-TTCGAAG 393
| |||||||||||||| |||| |||||| || ||||| || ||||| ||||| || ||||
Sbjct 564 TATCTCGGATTTACTCAGCTGGGATTCTAAGTCATGGATTTGCGATCGTTGTGTT-GAAG 622
Query 394 CCTAGTGATAAAGCTTGTAGAGATGATATGAGGTTTTACGTTAGGGATTTGTTGACAAGG 453
|||| || ||| ||||||| |||||| |||||||||||| ||||||||||||| || ||
Sbjct 623 CCTAATGGTAATGCTTGTAAAGATGACATGAGGTTTTACATTAGGGATTTGTTAACGAGA 682
Query 454 ATGAAGATTGGTGATGTGGAGATGAAGAAGCAAGCTTTGGTTAAGTTGAATGAATCTATG 513
||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 683 ATGAAGATTGGAGATCTGGAGATGAAGAAACAAGCTTTGGTTAAGCTGAATGAAGCTATG 742
Query 514 GAAGAAGATGATAGGTATATGAAGATTGTTG-TCGAAACCAGCGACATGGTTAATGTT-T 571
|| ||||||||||| ||| | |||||| || | || | || || |||||||||||| |
Sbjct 743 GAGGAAGATGATAGATATGTTAAGATT-CTGATTGAGATTAGTGATATGGTTAATGTTCT 801
Query 572 TGATTGAGTTT-TTGGATTCTGAGATTGGGATTCAAGAGGAGGCTTCTAAAGCTTTGTTT 630
|| ||| |||| || ||||||||||||||||||||||| || || | |||||| |||||
Sbjct 802 TG-TTGGGTTTCTT-GATTCTGAGATTGGGATTCAAGAAGAATCTGCCAAAGCTGTGTTT 859
Query 631 TTGATATCTGGGTTTGATTCGTATAAGCCTGTTTTGATTAGATCTTGCGTGGTTGGTCCT 690
|| ||||||||||||| ||| |||| | ||||||||| ||||| | ||| ||||||||
Sbjct 860 TTTATATCTGGGTTTGGTTCTTATAGGGATGTTTTGATCAGATCAGGTGTGATTGGTCCT 919
Query 691 TTGGTTAGGG-TGTTGGAAAACGGAAACGTTGTTGGTAGAGAAGCGTCCGCAAGGTGTTT 749
|||||||||| | || || || || || | |||||||||||||||||| |||||||||||
Sbjct 920 TTGGTTAGGGTTCTT-GAGAATGGGAATGGTGTTGGTAGAGAAGCGTCTGCAAGGTGTTT 978
Query 750 GATGAAATTAACTGAGAATTCGGAGAATGCTTGGTCTGTCTCTGCTCATGGAGGAGTGGC 809
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 979 GATGAAATTAACTGAGAATTCTGAGAATGCTTGGTCTGTTTCTGCTCATGGAGGTGTTTC 1038
Query 810 TGCTTTGTTAAAGATTTGTTCTTGTGGTGAATTTGGTGGTGAATTGATTGCTAGC-TCGT 868
|||||||| ||||||||||||||| |||| ||||||||||||||||||| || | ||||
Sbjct 1039 AGCTTTGTTGAAGATTTGTTCTTGTAGTGATTTTGGTGGTGAATTGATTGGTA-CTTCGT 1097
Query 869 GTGGAGTGTTGAGAAATCTAGTTGGTGTTGAAGAAATCAAGAGGTATATGATTGAAGAAG 928
|||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||
Sbjct 1098 GTGGTGTGTTGAGAAATCTCGTTGGTGTTGAAGAGATCAAGAGGTTTATGATTGAAGAAG 1157
Query 929 A-CAT--GGTTTCTACTTTTATCAAGCTTATAGGATCCAGA-GATGAGATTGTTCAGGTA 984
| ||| ||| ||||||| ||||||||||| |||| || | || |||||||||||||||
Sbjct 1158 ATCATACTGTTGCTACTTTCATCAAGCTTATTGGAT-CAAAGGAGGAGATTGTTCAGGTA 1216
Query 985 AATTCTATTGATCTT-TTGTCAAGTATGTGTTGTAGAGATGAAGAAAGTCGTGAGATTTT 1043
|||||||||||| || ||| ||||||||||||| ||| ||| ||| || || || ||
Sbjct 1217 AATTCTATTGAT-TTACTGTTGAGTATGTGTTGTAAAGACGAACAAACCCGGGACATCTT 1275
Query 1044 GGTTAGAGGAGGAGGAATTCAAGAGCTTGTG-CT-TG-TATCAGATCCCAATTCGTTGTC 1100
|||||||| |||||||||||| ||||| ||| | || ||||||||||||||||||||||
Sbjct 1276 GGTTAGAGAAGGAGGAATTCAGGAGCTAGTGAGTGTGTTATCAGATCCCAATTCGTTGTC 1335
Query 1101 CTCTTCGAAATCTAAGGAAATGGCATTGAGGGCAATTCATAACTTGTGTTTTGGGTCAGT 1160
||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| ||||| |
Sbjct 1336 TTCTTCGAAATCTAAGGAGATAGCATTAAGGGCGATTGATAACTTATGTTTCGGGTCTGC 1395
Query 1161 GAGTTACTTGAATGCATTGTTGAGTAGCCGTTTCTTAGATCATTTGTTGTATTTGCTGAG 1220
| ||| |||||||||||| || || || ||||| ||||||||| || || |||| ||
Sbjct 1396 GGGTTGTTTGAATGCATTGATGGGTTGCAAATTCTTGGATCATTTGCTGAATCTGCTAAG 1455
Query 1221 AAATGGGGAGACTTCTGTTCAAGAATCCGCGTTAAAGGTTACATCCAGGCTTTGTAGTTT 1280
||||||||||| ||||||||||||||| || || ||||| ||||| ||||| ||||||||
Sbjct 1456 AAATGGGGAGATTTCTGTTCAAGAATCAGCCTTGAAGGTCACATCTAGGCTATGTAGTTT 1515
Query 1281 ACCAACG--GATGTTAAGAGGATAATGGGCGATGCGGGTTTTAT-CCCGGAGCTAGTTAG 1337
| ||| | || ||||||||||||||||| || ||||||||||| ||| ||||||||||
Sbjct 1516 A-CAA-GAAGAGGTTAAGAGGATAATGGGAGAGGCGGGTTTTATGCCC-GAGCTAGTTAA 1572
Query 1338 GTTCCTCGATGCTAAATCTTTACG-CGTCCGGGAAATGGCAAGCGAGGCGCTGTATTGCT 1396
|| ||||| || ||||| || | || || |||||||| |||| ||| ||||| || |
Sbjct 1573 ATTTCTCGACGCCAAATCGATA-GATGTACGAGAAATGGCGAGCGTGGCACTGTACTGTT 1631
Query 1397 TGATCTCGGTCCCAAAGAACAGGAAGAAG-TTCCTGCAGGAAGACTGCAACATCAGCTAC 1455
|||||||||| |||| ||||||||||||| || | || || |||| ||||| ||||||
Sbjct 1632 TGATCTCGGTTCCAAGGAACAGGAAGAAGTTTGC-ACAAGACGACTTTAACATTAGCTAC 1690
Query 1456 ATTCTTCAGTTGCTAGATCAGGAAGAAAGGATG-AATGAGAGAAGTGATTTGGGTAACAC 1514
||||| ||||||||||| || ||||| ||| | |||| ||| || |||| ||||||||
Sbjct 1691 ATTCTCCAGTTGCTAGACCATGAAGATGGGA-GCAATGTGAGCAGCGATTCAGGTAACAC 1749
Query 1515 GAAGTCCTTGATTTTGATATTGATGTCGTTAACGAGCTGCAACAGCGCGAGACGAAAGAT 1574
|||| ||||| | |||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 1750 AAAGTTTTTGATATCGATATTGATGTCTTTAACGAGCTGCAATAGCGCGAGAAGAAAGAT 1809
Query 1575 TTCG-GCTTCTGGTTACTTGAAAATCATAGAGAAACTAGCTGAAAGAGAAGATTCAGATG 1633
| || | ||| || || ||||||| ||||||||| ||||| |||| |||| ||||||||
Sbjct 1810 TGCGAG-TTCAGGGTATTTGAAAAGCATAGAGAAGCTAGCAGAAACTGAAGGTTCAGATG 1868
Query 1634 CTAAGAAACTTGTGAAGAAGCTATCTAGGAACAGATTCCACACCATACTTGGTGGTATTT 1693
||||||||||||||||||||||||| | ||||||||||| || |||||| |||||||||
Sbjct 1869 CTAAGAAACTTGTGAAGAAGCTATCAATGAACAGATTCCGCAGCATACTCAGTGGTATTT 1928
Query 1694 GGCATTCCTAA 1704
|||||||||||
Sbjct 1929 GGCATTCCTAA 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5