BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919937
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11260.1 | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr... 2643 0.0
> AT1G11260.1 | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777328-3780337
FORWARD LENGTH=1905
Length=1905
Score = 2643 bits (1431), Expect = 0.0
Identities = 1544/1600 (97%), Gaps = 2/1600 (0%)
Strand=Plus/Plus
Query 6 TTTAGAATAAAAGAAATGCCTGCCGGTGGATTCGTCGTCGGAGATGGCCAAAACGCTTAT 65
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 118 TTTAGGATAAAAGAAATGCCTGCCGGTGGATTCGTCGTCGGGGATGGCCAAAAGGCTTAT 177
Query 66 CCCGGCAAACTCACTCCCTTTGTTCTCTTCACTTGCGTTGTAGCTGCCATGGGCGGTCTC 125
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 CCCGGCAAACTCACTCCCTTTGTTCTCTTCACTTGCGTTGTTGCTGCCATGGGCGGTCTC 237
Query 126 ATCTTCGGATACGATATCGGAATCTCCGGTGGTGTGACGTCGATGCCGTCTTTCCTTAAG 185
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 238 ATCTTCGGATACGATATCGGAATCTCCGGTGGTGTGACGTCTATGCCGTCTTTCCTCAAG 297
Query 186 CGATTCTTCCCGTCGGTGTACCGGAAACAACAAGAGGACGCGTCAACAAACCAGTACTGT 245
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 298 CGATTCTTCCCGTCGGTGTATCGGAAACAACAAGAGGACGCGTCAACGAACCAGTACTGT 357
Query 246 CAGTACGATAGCGCGACGCTTACGATGTTCACTTCGTCTCTATATCTAGCGGCGCTAATA 305
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 358 CAGTACGATAGCCCGACGCTAACGATGTTCACATCGTCTCTATATCTAGCGGCGCTAATT 417
Query 306 TCGTCGCTGGTGGCTTCCACCGTGACAAGAAAGTTCGGACGGAGGCTCTCGATGCTCTTC 365
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 TCGTCGCTGGTGGCTTCCACCGTGACAAGAAAGTTCGGACGGCGGCTCTCGATGCTCTTC 477
Query 366 GGCGGCATACTCTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCTAAACATGTGTGGATG 425
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 478 GGCGGCATACTCTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCCAAACATGTTTGGATG 537
Query 426 CTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGGCTGTGCCA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGGCTGTGCCA 597
Query 486 CTATACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCTTTAAACATTGGTTTCCAG 545
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTGTACCTCTCTGAGATGGCTCCATACAAATACAGAGGAGCTTTAAACATTGGTTTCCAG 657
Query 546 CTCTCAATCACAATCGGAATCCTCGTCGCCGAAGTACTCAACTACTTCTTCGCCAAGATC 605
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 658 CTCTCAATTACAATCGGAATCCTCGTCGCCGAAGTGCTAAACTACTTCTTCGCCAAGATC 717
Query 606 AAAGGCGGTTGGGGATGGCGGCTCAGCCTCGGAGGCGCGGTGGTTCCCGCCTTGATCATA 665
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 718 AAAGGCGGTTGGGGATGGCGGCTCAGTCTCGGAGGCGCGGTGGTTCCTGCCTTGATCATA 777
Query 666 ACCATCGGCTCCCTCGTCCTCCCTGACACTCCCAATTCAATGATCGAGCGTGGCCAACAC 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACCATCGGCTCCCTCGTCCTCCCTGACACTCCCAATTCAATGATCGAGCGTGGCCAACAC 837
Query 726 GAAGAGGCCAAAACCAAGCTCAGGCGAATCCGTGGTGTCGATGACGTCAGCCAAGAGTTT 785
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAGAAGCCAAAACCAAGCTCAGACGAATCCGTGGTGTCGATGACGTCAGCCAAGAGTTT 897
Query 786 GACGATTTAGTCGCCGCTAGTAAAGAGTCGCAGTCGATAGAGCATCCGTGGAGAAACCTC 845
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GACGATTTGGTCGCCGCTAGTAAAGAGTCGCAGTCGATAGAGCACCCGTGGAGAAACCTC 957
Query 846 CTCCGCCGTAAATACCGACCACATCTCACGATGGCCGTTATGATTCCGTTCTTTCAGCAG 905
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 958 CTCCGCCGCAAGTACCGACCACATCTCACAATGGCCGTTATGATTCCGTTCTTTCAACAG 1017
Query 906 CTAACCGGAATCAATGTGATTATGTTTTACGCTCCGGTTTTGTTCAACACCATTGGTTTC 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTAACCGGAATCAATGTGATTATGTTTTACGCTCCGGTTTTGTTCAACACCATTGGTTTC 1077
Query 966 ACGACCGATGCTTCTCTCATGTCCGCTGTGGTCACTGGCTCGGTTAACGTTGCCGCTACG 1025
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 ACGACCGATGCTTCTCTCATGTCCGCTGTGGTCACTGGCTCGGTTAACGTGGCCGCTACG 1137
Query 1026 CTTGTTTCTATCTACGGTGTTGACAGATGGGGACGTCGGTTTCTCTTTCTTGAAGGTGGT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTTGTTTCTATCTACGGTGTTGACAGATGGGGACGTCGGTTTCTCTTTCTTGAAGGTGGT 1197
Query 1086 ACACAAATGCTTATATGCCAGGCTGTGGTTGCAGCGTGCATAGGGGCCAAGTTCGGGGTA 1145
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1198 ACACAAATGCTTATATGCCAGGCTGTGGTTGCAGCTTGCATAGGGGCCAAGTTTGGGGTA 1257
Query 1146 GACGGGACTCCTGGTGAGTTACCAAAGTGGTATGCTATCGTGGTTGTAACGTTTATTTGC 1205
|||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1258 GACGGGACCCCTGGTGAGCTACCAAAGTGGTATGCTATAGTGGTTGTAACGTTCATTTGC 1317
Query 1206 ATCTATGTGGCGGGTTTTGCGTGGTCATGGGGCCCACTAGGGTGGTTAGTACCGAGTGAA 1265
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 ATCTATGTGGCGGGTTTTGCGTGGTCGTGGGGCCCACTAGGGTGGTTAGTACCGAGTGAA 1377
Query 1266 ATCTTCCCATTGGAGATAAGGTCCGCGGCGCAGAGTATCACGGTGTCAGTGAACATGATC 1325
|||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1378 ATCTTCCCGTTGGAGATAAGGTCGGCGGCGCAGAGTATCACCGTGTCCGTGAACATGATC 1437
Query 1326 TTCACGTTCATTATAGCGCAAATCTTCTTGACGATGCTCTGCCATTTGAAGTTTGGGTTA 1385
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1438 TTCACGTTCATTATCGCGCAAATCTTCTTGACGATGCTTTGTCATTTGAAGTTTGGGTTA 1497
Query 1386 TTCCTCGTGTTCGCCTTCTTT-GTGGTGGTGATGTCGATCTTTGTATACATATTCTTGCC 1444
||||| || |||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1498 TTCCTTGTTTTCGCCTT-TTTCGTGGTGGTGATGTCGATCTTTGTATACATTTTCTTGCC 1556
Query 1445 GGAGACCAAGGGGATTCCGATAGAGGAGATGGGTCAAGTGTGGAGGTCACATTGGTATTG 1504
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1557 GGAGACGAAAGGGATTCCGATAGAGGAGATGGGTCAAGTGTGGAGGTCACACTGGTATTG 1616
Query 1505 GTCAAGGTTTGTGGAGGATGGTGAGTATGGGAATGCGCTTGAGATGGGTAAGAGCAGTAA 1564
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1617 GTCAAGGTTTGTGGAGGATGGTGAGTATGGGAATGCGCTTGAGATGGGCAAGAACAGTAA 1676
Query 1565 CCAAGCTGGAACTAAGCATGTTTGATTCATCATTGttttt 1604
|||||||||||| |||||||||||||| ||||||||||||
Sbjct 1677 CCAAGCTGGAACGAAGCATGTTTGATTTATCATTGTTTTT 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5