BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919938
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27860.1 | Symbols: AXS1 | UDP-D-apiose/UDP-D-xylose synthas... 614 3e-175
> AT2G27860.1 | Symbols: AXS1 | UDP-D-apiose/UDP-D-xylose synthase
1 | chr2:11864393-11866907 REVERSE LENGTH=1525
Length=1525
Score = 614 bits (332), Expect = 3e-175
Identities = 393/423 (93%), Gaps = 1/423 (0%)
Strand=Plus/Plus
Query 13 ACAATATGCATGATCGGAGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAATTGATG 72
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 119 ACAATATGCATGATCGGCGCCGGAGGTTTCATCGGTTCACATCTCTGTGAAAAGCTCTTG 178
Query 73 ATGGAGACGCCTCAAAAGGTACTTGCGCTTGATGTTTACAACGAGAAGATCAAACACTTG 132
| |||||||| || ||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 179 ACCGAGACGCCACATAAGGTGCTTGCGCTCGATGTTTACAACGATAAGATCAAACACTTG 238
Query 133 CTTGAACCTGATACCGTTGAATGGAGTGGTCGGATCCAGTTTCATCGTATCAATATTAAG 192
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTTGAGCCTGATACCGTTGAATGGAGTGGTCGGATCCAGTTTCATCGTATCAATATTAAG 298
Query 193 CATGATTCAAGGCTTGAAGGTCTTATTAAGATGGCGGATCTGACTATACATCTTGCTGTG 252
|||||||| || |||||||||||| |||||||||||||||||| |||| ||||||||| |
Sbjct 299 CATGATTCGAGACTTGAAGGTCTTGTTAAGATGGCGGATCTGATTATAAATCTTGCTGCG 358
Query 253 ATCTGTACTCCAGCTGATTACAATACACTTCCTCTTGAAACAATCTACAACAATTTCATT 312
|||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||||||
Sbjct 359 ATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCATT 418
Query 313 GATGCGCGTCCAGTTGTTAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCT 372
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GATGCGCTTCCAGTTGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCT 478
Query 373 ACCTGTGAAGTGTATGGAAAAACCACTGGTAGCTTTCTTCCTAAGGATCATCCTTTGGCG 432
||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| || ||
Sbjct 479 ACCTGTGAAGTTTATGGAAAAACCATTGGAAGCTTTCTTCCTAAGGATCATCCTCTG-CG 537
Query 433 TGA 435
|||
Sbjct 538 TGA 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21665399819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5