BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919969
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11510.1 | Symbols: | DNA-binding storekeeper protein-relat... 394 5e-109
> AT1G11510.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:3871778-3872836 REVERSE
LENGTH=1059
Length=1059
Score = 394 bits (213), Expect = 5e-109
Identities = 447/552 (81%), Gaps = 47/552 (9%)
Strand=Plus/Plus
Query 1 TTGATGTTAGTAAGATTCAGTTTATGGAAAAGCTTAGGAG-TTTAAAGAAGAAGTATGAG 59
||||||||||||||| |||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 536 TTGATGTTAGTAAGAATCAGCTTATGGAAAAGCTTAGG-GCTTTAAAGAAGAAGTATGAG 594
Query 60 AACAATCTTGGTAAAGCCAAGGATGGTGATGAACCTACATTCGTTAAACCTCATGATCGC 119
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 595 AACAATCTTGGTAAAGCCAAGGATGGTGTTGAACCTACTTTCGTCAAACCTCATGATCGC 654
Query 120 AAGGCTTTTGAATTGTCTAAGTTAGTTTGGGGAGGTATTAGAATGGTTCTT-CAATCGGG 178
|||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct 655 AAGGCTTTTGAATTGTCTAAGTTAGTTTGGGGAGGTATTAGAATGGCTCTTGCA-TCTGG 713
Query 179 TATGAAATCTAATGGGAAGTCGAAGAAGAGCAGTAAGTCGAAGAAAGTTGAGTCTGTGAA 238
|||||||||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 714 TATGAAATCTAATGAGAAGTCGAAGAAGAGTAGTAAGT---------TTGAGTCTGTGAA 764
Query 239 GCATGAGA-TTGATTGTGAAGACGATGTGACTAATAAAGGAGAAGCATCTTTGCT--TG- 294
|||||| | |||||| | | | || | || | | | || || || || ||
Sbjct 765 GCATGA-ACTTGATTCTT----CT-T-TGCCCAACA--GTAAAAACAACTGTGAAGATGA 815
Query 295 G-TGCTTTGGA--AATGGATACG-CT-TGTGA-A--GTCTTCTCTTGTTAGATCGATAGC 346
| || | ||| || ||| | | || | | | | |||||||||||||||||||||||
Sbjct 816 GGTGAT--GGATGAA-GGAGAAGTCTCTTTTACAAAGTCTTCTCTTGTTAGATCGATAGT 872
Query 347 GCGTTTTGGTC-TGGATCAACTTGTTGCTCAACAAGGATTGAGTTTGCTTTCCTCGGAGG 405
| || |||| | ||||| ||||| ||||||||||||||||||| |||| |||| |||
Sbjct 873 GGGTCTTGG-CATGGATGAACTTACTGCTCAACAAGGATTGAGTAAGCTTGCCTCAAAGG 931
Query 406 ATAAGAAGAGATTCGAGGTGCAGTGGAAAGCGTTGCAGT-TGAGGGAATTCGAGTT-TTT 463
||| ||||||||| | | ||||||||||||| ||||| | |||||||| ||||| |||
Sbjct 932 ATATGAAGAGATTTTACGAGCAGTGGAAAGCGATGCAGGCT-AGGGAATTTGAGTTCTTT 990
Query 464 ATCGCAGAAG-AGTTGTTTTCTTCATAAAGTGGTAAAAAAGATGA-CTGAAGTATCCCGA 521
| ||||||| | | |||||||| | ||||| || |||||| | |||||| || ||
Sbjct 991 TT-GCAGAAGCA-TGGTTTTCTTTTTGAAGTGCTATCAAAGAT-ATCTGAAGCATTTGGA 1047
Query 522 TCAAACGCTTAG 533
||||||||||||
Sbjct 1048 TCAAACGCTTAG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26523629616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5