BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919976

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11572.1 | Symbols:  | Plant thionin family protein | chr1:3...   464    2e-130


> AT1G11572.1 | Symbols:  | Plant thionin family protein | chr1:3884356-3884952 
FORWARD LENGTH=597
Length=597

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 279/293 (95%), Gaps = 0/293 (0%)
 Strand=Plus/Plus

Query  1    TCAACTTCTCACGAACTAAAATATGAAGAGCCGGAGCAGAAACTTAGCCACCCTGAGTTT  60
            |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct  78   TCAACTTCTCACGAACTACAATATGAAGAACCGGAGCAAAAACTTAGCCACCCTGAGTTT  137

Query  61   GATGATAATTACGTTATTGACATGGACGAATATCGTGGAAGGACAAGAAGCACTACTAGG  120
            ||||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||
Sbjct  138  GATGATAATTACGTTATTGACATGGTCGGATATCGTAGTAGGACAAGAAGCACTACTAGG  197

Query  121  TAAGAAAGTATTGCCGCTATGTCACAGAGAATGTATGCCAATATGCATGAAAGTGACCGA  180
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  198  AAAGAAAGTATTGCCGCTATGCCACAGAGAATGTATGCCAATATGCATGAAAGTGATCGA  257

Query  181  AGCCACGCAAGAGATTTGCGAACCTGCATGCCAATCTGGTTGTCTCCAGCTTCAAGGTAG  240
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  258  AGCCACGCAAGACATTTGCGAACCTGCATGCCAATCTGGTTGTCTTCAGCTTCAAGGTAG  317

Query  241  AGGCACCGGACTTTCAGCCTCCGATCAAGGAGTCGATATGGTCATCGCATAAA  293
            |||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct  318  AGGCACCGGACTTTCAGCTTCCGATCAAGGAGTCGATATGGTCATTGCATAAA  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5