BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919978

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06240.1 | Symbols: emb2735 | embryo defective 2735 | chr5:1...   172    2e-42
  AT1G07390.3 | Symbols: AtRLP1, RLP1 | receptor like protein 1 |...   122    2e-27


> AT5G06240.1 | Symbols: emb2735 | embryo defective 2735 | chr5:1888311-1889698 
FORWARD LENGTH=744
Length=744

 Score =  172 bits (93),  Expect = 2e-42
 Identities = 136/154 (88%), Gaps = 13/154 (8%)
 Strand=Plus/Plus

Query  137  GTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGC----T-AG-G---T---T-CTGAA  183
            ||||||||||||||||||||||||||||||||||||    | || |   |   | |||||
Sbjct  208  GTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCCTGAA  267

Query  184  CTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAACCTAAAAGACAAGTGAAAGAG  243
            |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct  268  CTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAG  327

Query  244  ACAGAGAGCGAGCCCTCTGTTTTGGAAGATCTTG  277
             |||||| ||||||||||||||||||||||||||
Sbjct  328  GCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTG  361


 Score = 76.8 bits (41),  Expect = 1e-13
 Identities = 46/48 (96%), Gaps = 1/48 (2%)
 Strand=Plus/Plus

Query  52   AAGTTGAAGCTGAAGGTTGTGTATCGTAAGGTCTCCGATTACGATCTG  99
            ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  67   AAGATGAAGCTGAAGGTTGTGTATCGTAAGGTCTCCGATTAC-ATCTG  113


> AT1G07390.3 | Symbols: AtRLP1, RLP1 | receptor like protein 1 
| chr1:2269893-2274820 FORWARD LENGTH=3418
Length=3418

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 70/72 (97%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  277   GGCTATTTAGGGATTTGCAGACTAATAAAACTCAGGGAGCTGGATTTGAGCAGCAATGCT  336
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1048  GGCTATTTAGGGATTTGCAGACTAATGAAACTCAGGGAGCTGGATTTGAGCAGCAATGCT  1107

Query  337   TTAACAAGACTA  348
             |||||||| |||
Sbjct  1108  TTAACAAGTCTA  1119



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17744515397


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5