BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919984

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11608.1 | Symbols:  | F-box associated ubiquitination effec...   176    2e-43


> AT1G11608.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr1:3905579-3906818 FORWARD LENGTH=1240
Length=1240

 Score =  176 bits (95),  Expect = 2e-43
 Identities = 114/123 (93%), Gaps = 2/123 (2%)
 Strand=Plus/Plus

Query  159  TCTTGTGTCGGTATCGATTTCGACGAACTCGAAAACCCTTGTTTGAATTTGCAGGCTTTT  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  263  TCTTGTGTCGGTATCGATTTCGACGAACTCGAAAACCCTTGTTTGAATTTGCAGGTTTTT  322

Query  219  CAACCAATTTCAACCTCAAATATATT-GGTACAGAACATGTATCATTGTGATGGTATATT  277
            ||||||||||| || | |||| | || |||||||||||||||||||||||||| | ||||
Sbjct  323  CAACCAATTTCGACATTAAAT-TGTTTGGTACAGAACATGTATCATTGTGATGATTTATT  381

Query  278  GTT  280
            |||
Sbjct  382  GTT  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26222224734


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5