BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919991
Length=2365
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11660.1 | Symbols: | heat shock protein 70 (Hsp 70) family... 2527 0.0
> AT1G11660.1 | Symbols: | heat shock protein 70 (Hsp 70) family
protein | chr1:3920543-3924555 FORWARD LENGTH=2617
Length=2617
Score = 2527 bits (1368), Expect = 0.0
Identities = 1454/1497 (97%), Gaps = 0/1497 (0%)
Strand=Plus/Plus
Query 8 TTGAGATTTCTTAAAATGAGTGTGGTGGGATTTGATGTTGGGAATGAGAACTGTGTTATC 67
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 103 TTGAGGTTTGTTAAAATGAGTGTAGTGGGATTTGATGTTGGGAATGAGAACTGTGTTATC 162
Query 68 GCAGTTGCAAAGCAACGGGGGATCGATGTTTTGTTGAACGATGAATCGAACCGAGAAAAT 127
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 163 GCAGTTGCAAAGCAACGAGGGATCGACGTTTTGTTGAACGATGAATCGAACCGAGAAAAT 222
Query 128 CCTGCTATGGTTTCCTTTGGTGAGAAGCAGAGATTCATGGGTGCTGCTGCTGCTGCCTCT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGCTATGGTTTCCTTTGGTGAGAAGCAGAGATTCATGGGTGCTGCTGCTGCTGCCTCT 282
Query 188 GCTACTATGCATCCCAAATCAACTATTTCGCAGTTAAAGAGATTGATCGGTAGGAAATTT 247
||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 283 GCTACTATGCATCCCAAGTCAACCATTTCTCAGTTAAAGAGATTGATCGGTAGGAAATTC 342
Query 248 AGGGAACCTGATGTTCAGAATGATCTGAGGTTGTTCCCTTTCGAAACTTCTGAAGACTCT 307
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 343 AGGGAGCCTGATGTTCAGAATGATCTGAGGTTGTTTCCTTTTGAAACTTCTGAAGACTCT 402
Query 308 GATGGTGGAATTCAAATTCAGCTTCGGTACATGGGTGAGATTCAGAGCTTCAGTCCGGTG 367
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 403 GATGGTGGAATTCAAATTCGGCTTCGGTATATGGGTGAGATACAGAGCTTCAGTCCGGTG 462
Query 368 CAGATATTAGGCATGCTGCTTTCACATTTGAAGCAGATAGCAGAGAAGAGTCTCAAAACG 427
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 463 CAGATATTAGGCATGTTGCTTTCACATTTGAAGCAGATTGCAGAGAAGAGTCTCAAAACG 522
Query 428 CCTGTTTCAGACTGTGTCATTGGGATTCCATCCTACTTTACAAACTCACAAAGACTTGCC 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CCTGTTTCAGACTGTGTCATTGGGATTCCATCCTACTTTACAAACTCACAAAGACTTGCC 582
Query 488 TATTTGGATGCTGCTGCCATTGCTGGCCTGAGGCCATTGAGACTGATGCACGATTCTACT 547
|||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 583 TATTTGGATGCTGCAGCCATTGCTGGCCTGAGGCCATTGAGATTGATGCATGATTCTACC 642
Query 548 GCCACTGCACTTGGATATGGTATATACAAGACAGATTTGGCAGCTAACTCGAGCCCTACT 607
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 643 GCCACTGCACTTGGATATGGTATATACAAGACAGATTTGGTAGCTAACTCGAGCCCTACT 702
Query 608 TACATTGTGTTTATCGATATCGGTCACTGCGATACACAAGTGTGTGTGGCATCGTTTGAG 667
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 703 TACATTGTGTTTATCGATATCGGTCACTGTGATACACAAGTGTGTGTGGCATCGTTTGAG 762
Query 668 TCTGGAAGCATGAGAGTCCGTTCTCATGCTTTTGATAGAAACTTGGGCGGGAGAGATTTT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCTGGAAGCATGAGAGTCCGTTCTCATGCTTTTGATAGAAACTTGGGCGGGAGAGATTTT 822
Query 728 GATGAGGTTCTCTTCAACCACTTTGCCGTTGAATTTAAGGAGAAATACAACATAGATGTA 787
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 823 GATGAGGTTCTCTTCAACCACTTTGCCCTTGAATTTAAGGAGAAATACAACATAGATGTA 882
Query 788 TATACAAATACCAAGGCGTGTGTTAGGTTAAGGGCATCATGTGAGAAACTTAAAAAGGTC 847
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 883 TATACAAATACCAAGGCGTGTGTTAGGTTAAGGGCATCGTGTGAGAAAGTTAAAAAGGTC 942
Query 848 TTGAGTGCAAATGCTGAGGCACAGCTGAATATAGAATGTCTGATGGAGGAGAAGGACGTG 907
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 943 TTGAGTGCAAATGCTGAGGCACAGCTGAATATTGAATGTCTGATGGAGGAGAAGGACGTG 1002
Query 908 AAGAGCTTCATCAAGAGAGAAGAGTTTGAGAAGTTGTCAGCAGGCTTGTTGGAGAGATTA 967
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1003 AGGAGCTTCATCAAGAGAGAAGAGTTTGAGCAGTTGTCAGCAGGCTTGTTGGAGAGATTA 1062
Query 968 ATTGTACCGTGTAAAAAGGCTTTGGCTGACTCTGGTGTAAGTTTGGATCATATCCACTCT 1027
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1063 ATTGTACCGTGTCAAAAGGCTTTGGCTGACTCTGGTCTAAGTTTGGATCAAATCCACTCT 1122
Query 1028 GTGGAGCTAGTTGGTTCCGGGTCCCGCATTCCAGCTATATCTAAGATGCTAAGCTCATTG 1087
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1123 GTGGAGCTAGTTGGTTCAGGGTCCCGCATTCCAGCTATATCTAAGATGCTAAGCTCGTTG 1182
Query 1088 TTTAAGAGGGAGCTAGGCAGGACTGTGAATGCAAGTGAGTGCGTAGCTCGAGGATGTGCG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TTTAAGAGGGAGCTAGGCAGGACTGTGAATGCAAGTGAGTGCGTAGCTCGAGGATGTGCG 1242
Query 1148 CTTCAATGTGCAATGCTCAGTCCAGTTTTTCGAGTTAGAGATTATGAGGTTCAAGATTCT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CTTCAATGTGCAATGCTCAGTCCAGTTTTTCGAGTTAGAGATTATGAGGTTCAAGATTCT 1302
Query 1208 TTCCCTTTCGCAATCGGCTTTTCATCTGATAAAGGTCCCATAAACACACCATCGAATGAA 1267
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TACCCTTTCGCAATCGGCTTTTCATCTGATAAAGGTCCCATAAACACACCATCGAATGAA 1362
Query 1268 TTGCTATTTCCGAAAGGCCAGATCTTCCCAAGTGTAAAGGTTCTTAGTCTACACAGGGAA 1327
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1363 TTGCTCTTTCCGAAAGGCCAGATCTTCCCAAGTGTAAAGGTTCTTACTCTACATAGGGAA 1422
Query 1328 AACACTTTCCATTTGGAAGCCTTTTATGCAAACCATAATGAACTATCACCAGATTTACCA 1387
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1423 AACACTTTCCAGTTGGAAGCCTTTTATGCAAACCATAATGAACTATCACCAGATATACCA 1482
Query 1388 ACTCAGATAAGCAGTTTTATGATTGGGCCTTTTCATATATCGCACGGAGAAGCAGCACGT 1447
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1483 ACACAGATAAGCAGTTTTATGATTGGGCCTTTTCATATATCGCACGGAGAAGCGGCACGT 1542
Query 1448 GTCAAAGTAAGAGTTCAGCTAAATCTCCACGGGATTGTCACCATTGATTCAGCTACG 1504
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1543 GTCAAAGTAAGAGTTCAGCTAAATCTCCACGGGATTGTCACGATTGATTCAGCTACG 1599
Score = 1327 bits (718), Expect = 0.0
Identities = 795/832 (96%), Gaps = 5/832 (1%)
Strand=Plus/Plus
Query 1534 GCTAATAGAATATCACAAGGAGAATATAACTTCCGAAGAGATGATATCCGAAGAGAATCA 1593
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1599 GCTAATAGAATATCATAAGGAGAATATAACTTCTGAAGAGATGATATCTGAAGAGAATCA 1658
Query 1594 TCAATCTTCTGCTATGAAAGATGGCACTTTGGACCCTTCGTCAGGTTCTACTGGTAATGA 1653
|||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 1659 TCAATCTTCTGCTATGAAGGATGGCTCTTTGGACCCTTCGTCAGGTTCTATTGGTAATGA 1718
Query 1654 GCCCAAAGCTATCAAAAGAATGGAAATTCCAGTTGTTGCGAACGTGTCTGGTGCATTGAC 1713
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 GCCTAAGGCTATCAAAAGAATGGAAATTCCAGTTGTTGCGAACGTGTCTGGTGCATTGAC 1778
Query 1714 -AAGGGATGAGTTATCTGAGGCCAAACAGAGAGAGAACTCTTTAGTGGAGCAAGATCTGA 1772
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GAA-GGATGAGTTATCGGAGGCCAAACAGAGAGAGAACTCTTTAGTGGAGCAAGATCTGA 1837
Query 1773 AGATGGAATCGACAAAGGATAAGAAAAATGCTCTCGAATCCTTTGTTTATGAGATGCGTG 1832
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1838 AGATGGAATCGACAAAGGATAAGAAAAATGCTCTTGAATCTTTTGTCTATGAGATGCGTG 1897
Query 1833 ATAAGATGTTAAATACATATCGGAACACTGCAACCGAGTCAGAACGGGAATGCATAGCTA 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 ATAAGATGTTAAATACATATCGGAACACTGCAACCGAGTCAGAACGGGAATGCATAGCTA 1957
Query 1893 GAAATCTTCAGGAAACAGAGGATTGGCTATATGAAGATGGTGATGATGAATCTGAAAATG 1952
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1958 GAAATCTTCAGGAAACAGAGGAATGGCTATATGAAGATGGTGATGATGAATCTGAAAATG 2017
Query 1953 CGTACATCGAGAAGTTGAACGATATCAAAAAGCTCATCGATCCTATTGAAAATCGGTTCA 2012
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 2018 CGTACATCGAGAAGTTGAATGATGTCAAAAAGCTCATCGATCCTATTGAAAACCGGTTCA 2077
Query 2013 AAGATGGAGAAGAGCGACTTCAAGCATCAAAGGATCTTCTGAAAACTATTGCAGATAACC 2072
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2078 AAGATGGAGAAGAGCGAGTTCAAGCATCAAAAGATCTTCTGAAAACTATTGCAGATAACC 2137
Query 2073 GAATGGCTGCAGAGTCTCTTCCTCCTCCAAGAAAGAATGCGGTTCTCGATGAATGTCATA 2132
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2138 GAATGGCTGCAGAGTCTCTTCCTCCTCCAAGAAAGAATGCGGTTCTCGATGAATGCCATA 2197
Query 2133 AAGCTGAGAGGTGGCTCCAAGAGAAAACCACAAAACAGGAATCTTTACCCAAAGATGCTA 2192
||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 2198 AAGCTGAGAGGTGGCTCCACGAGAAAACCACAGAACAGGAATCTTTACCCAAAGACGCTA 2257
Query 2193 ATCCAGAGCTGCAATCTGCTGAAATCAAGAGAAAAGCCGATGCTCTTAACGCGACATGCA 2252
||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 2258 ATCCAGAGCTGCAATCTGCTGAAATCAGGAGAAAAGCTGATGCTCTAAACGCGACATGCA 2317
Query 2253 AGTACATTGGGAAATCAAACTCTCCTCCCGCGAAACCAGAACATAATGGATCGCATGGAA 2312
||||||||||||||||||||||||| ||||||||||| |||||||| ||||| | ||||
Sbjct 2318 AGTACATTGGGAAATCAAACTCTCCCCCCGCGAAACCGGAACATAACGGATCATACGGAA 2377
Query 2313 GTAGAAAATCAGATGATATGGAACTTGATTGATTGTTCTT-T--CTCTTATA 2361
|||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 2378 GTAGAAAATCAGATGATATGGAGCTTGATTGATTGTTCTTCTTTCTCTTATA 2429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117419074755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5