BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919994
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1048 0.0
> AT1G11690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G20350.1);
Has 5959 Blast hits to 4807 proteins in 476 species: Archae
- 156; Bacteria - 436; Metazoa - 2789; Fungi - 309; Plants
- 336; Viruses - 9; Other Eukaryotes - 1924 (source: NCBI BLink).
| chr1:3941469-3942212 FORWARD LENGTH=744
Length=744
Score = 1048 bits (567), Expect = 0.0
Identities = 688/747 (92%), Gaps = 6/747 (1%)
Strand=Plus/Plus
Query 21 ATGGAGAGCATAACGAAGTGGGACTTGGGATCTCTCCGAACGTATTACTCCGTTGAACCT 80
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGAGAGCATAACGGAGTGGGACTTGGGATCACTTCGAACGTATTACTCCGTTGAACCT 60
Query 81 TGTGAGAAGTTTCAAGAAGACGAGTTTTTAGACATTAGCCTCGTTCCTCGACTTCAAGCG 140
||||||| |||||||||||||||||||||||| ||| |||||||||| | |||||| ||
Sbjct 61 AGTGAGAACTTTCAAGAAGACGAGTTTTTAGACTTTAACCTCGTTCCTTGTCTTCAAACG 120
Query 141 GAGTTATGGAAGGCTCAATCGAGAATCAGAGAGCTTGAGGCTGAAAAGTTTGGGTCAGAG 200
||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 121 GAGCTATGGAAGGCTCAAACGAGAATCAAAGAGCTTGAGGCTGAAAAGTTTAAATCAGAG 180
Query 201 GAAAATATTAA-ATGTTTC-TCCAGACATCAAAGAAATGA-AAGAGAAGAAACCAGTGAT 257
|||| || ||| |||| || | |||| | ||||||||||| || ||||||||||| | ||
Sbjct 181 GAAACTA-TAAGATGTCTCAT-CAGAAACCAAAGAAATGAGAA-AGAAGAAACCACTAAT 237
Query 258 CCATTTGTTGATTACTtgaaagaaaagttaagcaaaaagagtgaagaaatgaaaagagtt 317
|||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||
Sbjct 238 CCATTTGTTGATTACTTGAAGGAAAAGTTAAGCAAAGAGAGGGAAGAAAAGAAAAGAGTT 297
Query 318 aaagctgagaaTTCTAGGTTAAAGAAGAAGATTTTGGACAGGGAATCATCAGTGAATCGG 377
|||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||
Sbjct 298 AAAGCTGAGAATTCTAGGTTAAAGAAGAAGATTTTGGATATGGAGTCATCAGTAAATCGG 357
Query 378 TTGAGAAGAGAAAGAGACACAATGGAGAAGGTGTGCGAGGAACTGGTGACGAGGATCAAT 437
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 TTGAGAAGAGAAAGAGATACAATGGAGAAGGTGTGCGAGGAACTGGTGACGAGGATCGAT 417
Query 438 GAATTGAAGGTGAATACTAGGAGGATGTGGGACGAAACAGAGGAGGAGAGGCACATGTTA 497
||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||
Sbjct 418 GAATTGAAGGTGAATACAAGGAGGGTGTGGGACGAAACGGAGGAGGAGAGGCAGATGTTG 477
Query 498 CATATGGCTGAGATGTGGAGGGAGGAAAGGGTTAGGGTTAAGTTCATGGATGCAAAACTT 557
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAGATGGCTGAGATGTGGAGGGAGGAAAGGGTTAGGGTTAAGTTCATGGATGCAAAACTT 537
Query 558 GCCTTGCAAGAAAAGTATGAGGAGATGAATTTGTTTGTGGTTGAGTTAGAGAAGTGTTTG 617
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 GCCTTGCAAGAAAAGTATGAGGAGATGAATTTGTTTGTGGTCGAGTTAGAGAAGTGTTTG 597
Query 618 GAGACGGCGAGAGAAGTAGGAGGAATTGAGGATAAGAGGCTGAGACAAGGTGAAGGTTTG 677
|||||||| ||||||||||| ||||||||||| |||||| | ||||| ||||||||||||
Sbjct 598 GAGACGGCTAGAGAAGTAGGGGGAATTGAGGAGAAGAGGTTAAGACATGGTGAAGGTTTG 657
Query 678 ATAAAGTTGGCCAGATCTATGGAAGCTGAAGACAATAAGATTGATTTTGGGAGATTTGAG 737
|||||| |||| | ||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 658 ATAAAGATGGCGAAATCTATGGAAGTTGTAGACAGTAAGATTGATTTTGAGAGATTTGAG 717
Query 738 TTTGTGTCTGATGAAGATAATGTTTAA 764
|||||||||||||||| ||||||||||
Sbjct 718 TTTGTGTCTGATGAAGGTAATGTTTAA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5