BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920006
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11780.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase ... 1661 0.0
> AT1G11780.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase
family protein | chr1:3976839-3979195 REVERSE LENGTH=1831
Length=1831
Score = 1661 bits (899), Expect = 0.0
Identities = 1020/1079 (95%), Gaps = 6/1079 (1%)
Strand=Plus/Plus
Query 4 CGACTGGTGAAGTGAA-AA-ATGTACGAATCGGCGAACGTCTCCGACGACGCAGATCGTA 61
||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGACTGGTGAA--GAAGAAGATGTACGAATCGGCGAACGTCTCCGACGACGCAGATCGTA 58
Query 62 CGGCTTTCCGGCAAGCAGAGAAAAAATACAAACTTTACTATGAAAAAGATTCAAAGTTCT 121
|||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 59 CGGCTTTCCGGCGAGCAGAGAAAAAATACAAACTTTACTATGAACAGGATTCTAAGTTCT 118
Query 122 CTAGAAGGAAGAAGCTACCAAAACCAATTGATTTGTCGGAGCTGCTTGATTTCAGTTTGA 181
|||||| |||||||||||||||||||||||||||||| ||| | |||||||||| |||||
Sbjct 119 CTAGAAAGAAGAAGCTACCAAAACCAATTGATTTGTCTGAGTTACTTGATTTCAATTTGA 178
Query 182 TTTCACAAGATTTCAACAATAACGGTGTTTTGCCTGACGGAATTAGGGTTTCGAAAGTTG 241
|||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 179 TTTCACAAAATTTCAACAATGACGGTGTTTTGCCAGACGGAATTAGGGTTTCGAAAGTTG 238
Query 242 ATTCTTCTCCTGTGTTCTGCATCGAGAATCGCCCTGGTTTTTACTTTATCCCTGGTGCAT 301
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 239 ATTCTTCTCCTGTGTTCTGCATCGATAATCGCCCTGGTTTTTACTTTATACCTGATGCAT 298
Query 302 TGAGTTTAGAGGAGCAATGTAAATGGATTAAAGAGAGTTTGACCAATTTTCCGCAGCCTC 361
|||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 299 TGAGTTTAAAGGAGCAATGTAAATGGATTAAAGAGAGCTTGACGAGTTTTCCGCAGCCTC 358
Query 362 CGAATAGAACAAATCACAATGCAATTTATGGTCCTATTGCTGATTTGTTCGATTCAGCTA 421
||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 359 CGAATAGAACAAACCACAATGCAATTTACGGTCCTATTGATGATTTGTTTGATTCAGCTA 418
Query 422 AAGATAATAAGGTATTGGTTCAGGAGGATCTTACCAACAACAAGTGGAAGTTCTATGAAG 481
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAAAACAAGGTATTGGTTCAGGATGATCTTACCAACAACAAGTGGAAGTTCTATGAAG 478
Query 482 AAGAT-GATATTGCAAAAGCAAAACAAAGTTCTTGCAAATCAGTTTCCGCTTCAGTTCTT 540
||| | ||||||| |||||||| || |||| ||||||||||||||| ||||||||||||
Sbjct 479 AAG-TAGATATTGAAAAAGCAACACGAAGTAGTTGCAAATCAGTTTCAGCTTCAGTTCTT 537
Query 541 TTGAGGAAGCTTCGATGGAGCACTCTCGGTTTACAGTTTGATTGGTCCAAGCGTAACTAT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 TTGAGGAAGCTTCGATGGAGCACTCTCGGTTTACAGTTCGATTGGTCCAAGCGTAACTAT 597
Query 601 GATGTTTCTCTCCCTCATAACAACATTCCTGACGCACTCTGTCAACTAGCTAAGACACAT 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 GATGTTTCTCTCCCTCATAACAACATCCCTGACGCACTCTGTCAACTAGCTAAGACACAT 657
Query 661 GCCGCCATTGCAATGCCTGACGGGGAGGAATTCCGTCCAGAGGGTGCAATTGTAAACTAT 720
||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 658 GCCGCCATTGCAATGCCTGACGGAGAGGAATTTCGTCCAGAGGGGGCTATTGTAAACTAT 717
Query 721 TTTGGCATAGGTGATACCCTTGGAGGCCACCTTGATGATATGGAAGCTGACTGGAGTAAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTGGCATAGGTGATACCCTTGGAGGCCACCTTGATGATATGGAAGCTGACTGGAGTAAA 777
Query 781 CCCATAGTAAGCATGAGCTTGGGGTGTAAAGCTATTTTCCTCTTAGGCGGAAAATCAAAA 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 CCCATAGTAAGCATGAGCTTGGGATGTAAAGCTATTTTCCTCTTAGGCGGAAAATCAAAA 837
Query 841 GATGATCCTCCTCATGCTATGTATCTCAGAAGTGGAGATGTTGTACTAATGGCTGGAGAA 900
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GACGATCCTCCTCATGCTATGTATCTCAGAAGTGGAGATGTTGTACTAATGGCTGGAGAA 897
Query 901 GCTAGAGAATGCTTTCACGGCGTACCCCGTATCTTTACGGATGCAGAAAATGCGGAAATT 960
|| ||||||||||||||||| |||||||||||||||||| || |||||||||||| |||
Sbjct 898 GCCAGAGAATGCTTTCACGGTATACCCCGTATCTTTACGGGTGAAGAAAATGCGGATATT 957
Query 961 TGTGCACTTGAATCAGAATTGTCCCATGAGAGTGGGCATTTTTTCACAGAGTACATAAAA 1020
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||
Sbjct 958 GGTGCACTTGAATCAGAATTGTCCCATGAGAGTGGACATTTTTTCGCAGAGTATATCAAA 1017
Query 1021 ACTTCGAGGATCAACATAAACATCAGGCAAGTTTTCTGAGTTGCCTGTATTCTCCTGCT 1079
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1018 ACTTCGAGGATCAACATAAACATCAGGCAAGTTTTCTGAATTGCCTGAATTCTCCTGCT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5