BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920007
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11790.1 | Symbols: ADT1 | arogenate dehydratase 1 | chr1:39... 2049 0.0
> AT1G11790.1 | Symbols: ADT1 | arogenate dehydratase 1 | chr1:3981248-3985215
FORWARD LENGTH=1660
Length=1660
Score = 2049 bits (1109), Expect = 0.0
Identities = 1183/1220 (97%), Gaps = 0/1220 (0%)
Strand=Plus/Plus
Query 1 AAAAATCTCCCAACTTTGCTATGGCTCTGAGGTGTTTTCCCATTTGGGTTTGTCCTCAAA 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 209 AAAAATCTCCCTGCTTTGCTATGGCTCTGAGGTGTTTTCCCATTTGGGTTTGTCCCCAAA 268
Query 61 CGACTCATCATCGTTCTCCTCTTGTGGGTCTCGCTGAATTCGACGCTAATAAACGCCGTC 120
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 269 CGACTCATCATCGTTCTCCTCTCATGGGTCTCGCTGAATTCGACGCTGATAAACGCCGTC 328
Query 121 GTTTCTGTCTCTGGGAGTGCTCTTCTTCAGCTTCTCAGAGGGCTGTCACTGCCATTGAAG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 329 GTTTCTGTCTCTGGGAGTGCTCTTCTTCAGCTTCTCAGAGAGCTGTCACTGCCATTGAAG 388
Query 181 GCGAGATTCCTTATAGCCATGAGCTCAAAAAGTCCTCTGATGAATTGGGTCTGACTCAGG 240
|||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 389 GCGAGATTCCTTTTAGCCGCGAGCTCAAAAAGTCCTCTGATGAATTGGGTTTGACTCAGG 448
Query 241 AGACTCAATCTGTTTCTTTTCACAGAGACTTAAGTATGCTTCCTAAACCGCTAACGGCAA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 449 AGACTCAATCTCTTTCTTTTCACAGAGACTTAAGTATGCTTCCTAAACCGCTAACTGCAA 508
Query 301 ACAGTCTTTACTCTTCTGATGGCGATGATTCAAAAGTCCGAATTTCGTTTCAGGGCATAC 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 509 ACAGTCTTTACTCTTCTGATGGCGATGATTCAAAAGTGCGAATTTCGTTTCAGGGGATAC 568
Query 361 CAGGTGCATATAGTGAAACAGCAGCACTAAAAGCATTTCCAAATTGTGAAACCGTTCCAT 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CAGGTGCATATAGTGAGACAGCAGCACTAAAAGCATTTCCAAATTGTGAAACCGTTCCAT 628
Query 421 GTGAACAGTTCGAAGCTGCGTTTCAGGCTGTTGAGCTCTGGTTGGTGGACAAAGCAGTAC 480
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 629 GTGAACAGTTCGAAGCTGCGTTCCAGGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTAT 688
Query 481 TACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTC 748
Query 541 ATAGGCTTCACATTGTCCAAGAAGTCCATTTGCCTGTAAATCATTGTCTCTTAGGAGTGC 600
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 749 ATAGGCTTCACATTGTCCAAGAAGTCCACTTGCCTGTGAATCATTGTCTCTTAGGAGTGC 808
Query 601 ATGGTGTTAAAAAGGAAGATATTAAATGTGTTCTAAGCCATCCTCAGGCGCTTGATCAAT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CTGGTGTTAAAAAGGAAGATATTAAATGTGTTCTAAGCCATCCTCAGGCGCTTGATCAAT 868
Query 661 GTGTGAATTCACTTAACAATTTAGGCATACAGAGAATTTCTGCAAAAGACACTGCCACTG 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 869 GTGTGAATTCACTTAACAATTTAGGCATACAGAGAATTTCTGCAAAAGATACTGCCACTG 928
Query 721 CTGCTCAGACTGTTTCTTCAAGCGGTAAGATCGACGTAGGAGCAATCGCGAGTGTACGGG 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 929 CTGCTCAGACTGTTTCTTCAAGTGGTAAGATCGACGTAGGAGCAATCGCGAGTGTACGGG 988
Query 781 CTGCAAATATATATGGTCTGGATATTCTTGCCGAGAACATACAAGATGATGCTAACAATG 840
|||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 989 CTGCAAATATCTATGGTCTAGATATTCTTGCTGAGAACATACAAGATGATGTTAACAATG 1048
Query 841 TGACTCGCTTTCTGATACTTGCCAGAGAGCCTATGATTCCAAGAACAGATCGACCATATA 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1049 TGACTCGCTTTCTGATACTTGCGAGAGAGCCTATGATTCCAAGAACAGATCGACCATATA 1108
Query 901 AGACAAGTATCGTGTTCTCGCTAGAAGAAGGTCCTGGTGTGCTGTTCAAGGCCTTGGCTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 AGACAAGTATCGTGTTCTCGCTAGAAGAAGGTCCTGGTGTGCTGTTCAAGGCCTTGGCTG 1168
Query 961 TTTTTGCTTTACGAAGCATTAACTTATCTAAGATAGAAAGTCGTCCGCAGAGAAGAAGAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TTTTTGCTTTACGAAGCATTAACTTATCTAAGATAGAAAGTCGTCCGCAGAGAAGAAGAC 1228
Query 1021 CGTTAAGAGTAGTTGATGGTTCTAACAATGGAAGCGCTAAGTACTTTGATTACTTATTCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 CGTTAAGAGTAGTTGATGGTTCTAACAATGGAAGCGCTAAGTACTTTGATTACTTATTCT 1288
Query 1081 ACATTGATTTTGAGGCTTCCATGGCTGATACACGTGCTCAGCATGCTCTTGGCCATCTAC 1140
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1289 ACATTGATTTTGAAGCCTCCATGGCTGATACACGTGCTCAGCACGCTCTTGGCCATCTAC 1348
Query 1141 AGGAATTCACAAGTTTCATCCGTATCCTCGGGTGTTATCCAATGGATCTAGTCAGATAAC 1200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 AGGAATTCGCAAGTTTCATCCGTATCCTCGGGTGTTATCCAATGGATCTAGTCAGATAAC 1408
Query 1201 CAAGCAAATCTCCTATTGAT 1220
| ||||| ||| | ||||||
Sbjct 1409 CGAGCAACTCTTCAATTGAT 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5