BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920008
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11800.1 | Symbols: | endonuclease/exonuclease/phosphatase ... 2109 0.0
> AT1G11800.1 | Symbols: | endonuclease/exonuclease/phosphatase
family protein | chr1:3985225-3987290 REVERSE LENGTH=1648
Length=1648
Score = 2109 bits (1142), Expect = 0.0
Identities = 1309/1385 (95%), Gaps = 29/1385 (2%)
Strand=Plus/Plus
Query 1 GATAAAGAA--AATTAGGGTAAATGT---CAACAATCCGATTTCTCAGAATTCTCACAAT 55
|||||| || ||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 7 GATAAA-AACTAATTAGGGTAAATGTCAACAACAATCCGATTTCTGAGAATTGTCACAAG 65
Query 56 TCGAGCAATGTCGTCATCGTCTTCCTCGTCCTCTTGGTCATGCAACAAATGTACTTTCCT 115
|||||||| | | ||| ||| |||||||| ||||||||||||||||||||
Sbjct 66 TCGAGCAA--T-G---TCG------TCG---TCTTGGTCCTGCAACAAATGTACTTTCCT 110
Query 116 CAATTCTGCGTCTCAGAAACTCAATTGCATGATCTGCTTGGCTCCTGTAtctctcccttc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CAATTCTGCGTCTCAGAAACTCAATTGCATGATCTGCTTGGCTCCTGTATCTCTCCCTTC 170
Query 176 ttcgtctcct--t-ctccttctctctcAATTTCCACGAACGATGAAGCTAAATGGGCGTG 232
|| ||||||| | | |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 171 TTTGTCTCCTCCTCCACCTTCTCTCTCAATTTCCGCGAACGATGAAGCTAAATGGGCTTG 230
Query 233 CAAGGCCTGTACTTTTTTGAACACGTACAAGAACTCAATCTGTGACGTCTGTGGAACGCG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 231 CAAGGCCTGTACTTTTTTGAACACGTACAAGAACTCAATCTGTGACGTCTGTGGAACACG 290
Query 293 ATTGCCAACGTCTTGTCTCCTGGGCTTTGACGATTTGACTGATTCGGGTCTCGAGAGTAA 352
|| ||||||||||| |||| |||| ||| | |||||||||||||||||||||||||||||
Sbjct 291 ATCGCCAACGTCTTCTCTCTTGGGATTTCAGGATTTGACTGATTCGGGTCTCGAGAGTAA 350
Query 353 CAACGCTGATTCCTCCGTCGGGTCTGTTTTCTTTCCTCTGCGGCGGTGTAGCAAGCGTAA 412
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 351 CGACGCTGATTCCTCCGTCGGGTCTGTTTTCTTTCCTCTGCGGCGGTGTATCAAGCGTAA 410
Query 413 AGCTATGGATCATGACGTTGTCGAGGTCGATGGTGCTTCTGTTGTTTGCTCTGAATCGCA 472
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGCTATGGATGATGACGTCGTCGAGGTCGATGGTGCTTCTGTTGTTTGCTCTGAATCGCA 470
Query 473 AGGTGTCATGAAGAAGAACAAAGAAATTGAAACGAAAGGGGTAGCTTCTGATTCAGGAAC 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 AGGTGTCATGAAGAAGAACAAAGAGATTGAAACGAAAGGGGTAGCTTCTGATTCAGGAAC 530
Query 533 ACCTTTAACTTGCTTGAAGATCTTAAGCTACAATGTTTGGTTTCGTGAAGACCTTGAGTT 592
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 531 ACCTTTAACTTGCTTGAAGATCTTGAGCTACAATGTTTGGTTTCGTGAAGACCTTGAGTT 590
Query 593 GAATCTAAGGATGAGAGCGATTGGTCACCTTATTCAGCTTCATTCTCCTCATCTCATATG 652
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 591 GAATCTAAGGATGAGAGCGATTGGTCATCTTATTCAGCTTCATTCTCCTCATCTCATATG 650
Query 653 TTTTCAGGAAGTCACTCCTGAGATATATGATATTTTCCGCAAGTCGAATTGGTGGAAAGC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTTTCAGGAAGTCACTCCTGAGATATATGATATTTTCCGCAAGTCGAATTGGTGGAAAGC 710
Query 713 GTATTCTTGTTCTGTCTCAGTTGATGTGGCAGTTTCAAGAGGCTACTACTGCATGCTGTT 772
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 711 GTATTCTTGTTCTGTCTCAGTTGATGTGGCAGTTTCGAGAGGCTACTACTGCATGCTGTT 770
Query 773 AAGCAAGTTGGGGGTGAAATCTTTCAGCAGCAAAAGCTTTGGGAACTCGATAATGGGAAG 832
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GAGCAAGTTGGGAGTGAAATCTTTCAGCAGCAAAAGCTTTGGGAACTCGATAATGGGAAG 830
Query 833 AGAACTATCTATCGCAGAAGTTGAAGTTCCAGGGAGAAAGCCACTTGTTTTTGCAACTAG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AGAACTATCTATCGCAGAAGTTGAAGTTCCAGGGAGAAAGCCACTTGTTTTTGCAACTAG 890
Query 893 CCATCTCGAGAGTCCCTGTCCAGGTCCTCCAAAATGGGACCAAATGTTCAGTCGAGAACG 952
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CCATCTTGAGAGTCCCTGTCCAGGTCCTCCAAAATGGGACCAAATGTTCAGTCGAGAACG 950
Query 953 CGTTGAACAAGCCAAAGAAGCAATCGAGATTCTCAGACCTAATACCAATGTGATATTCGG 1012
||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 951 CGTTGAACAAGCCAAGGAGGCAATTGAGATTCTCAGACCTAATGCCAATGTGATATTCGG 1010
Query 1013 GGGAGACATGAACTGG-GATGACAAGCTAGATGGGAAATTTCCTTTGGCAGACAAATGGG 1071
|||||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1011 GGGAGACATGAACTGGTGC-GACAAGCTAGATGGGAAGTTTCCTTTGCCAGACAAATGGG 1069
Query 1072 TCGATGTTTGGGAGGTTTTGAAACCAGGCGATTTGGGGTTTACATACGACACAAAAGCAA 1131
| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1070 TGGATGTTTGGGAGGTTTTGAAACCAGGTGATTTGGGTTTTACATATGACACAAAAGCAA 1129
Query 1132 ACCCAATGTTGTCCGGCAACCGAGCATTGCAGAAACGGTTAGACCGGATTTTGTGTCGTC 1191
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1130 ACCCAATGTTGTCCGGTAACCGGGCATTGCAGAAACGGTTAGACCGGATTTTGTGTCGTC 1189
Query 1192 TGGATGATTACAAGCTTGGCGGAATCGAGATGGTTGGGAAAGAGGCGATTCCTGGTTTAT 1251
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1190 TGGATGATTACAAGCTTGGTGGAATCGAGATGGTTGGGAAAGAGGCCATTCCTGGTTTAT 1249
Query 1252 CATATG-AGAAAGAGAAGAAAGTGAGGGGTGAGATCAAGAAGTTAGAGCTTCCGGTGTTG 1310
|||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1250 CATATGTA-AAAGAGAAGAAAGTGAGGGGTGACATTAAGAAGTTAGAGCTTCCGGTGTTG 1308
Query 1311 CCTAGTGATCATTTCGGTCTGCTTTTAACCCTTTTGCCGAAATGAGGTCAAAACTATTCA 1370
|||||||||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||||
Sbjct 1309 CCTAGTGATCATTTCGGTCTGCTTGTAACCCTTTCGCCAAAATGAGATCAAA-CTATTCA 1367
Query 1371 GAGCT 1375
|||||
Sbjct 1368 GAGCT 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5