BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920014
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11890.1 | Symbols: SEC22, ATSEC22 | Synaptobrevin family pr... 1127 0.0
> AT1G11890.1 | Symbols: SEC22, ATSEC22 | Synaptobrevin family
protein | chr1:4010779-4013125 FORWARD LENGTH=1094
Length=1094
Score = 1127 bits (610), Expect = 0.0
Identities = 661/686 (96%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 1 GGAGAAGAT-TTAAGGCAAAGATGGTGGAAATGACATTGATAGCTCGTGTTACTGACGGG 59
||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 128 GGAGAAG-TAATAAGGCAAAGATGGTGAAAATGACATTGATAGCTCGTGTTACTGATGGG 186
Query 60 TTGCCTCTAGCAGAGGGGCTCGATGATGGACGCGACTTACCAGATTCAGATATGTATAAG 119
|| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 187 TTACCTCTAGCTGAGGGGCTCGATGATGGACGTGACTTACCGGATTCAGATATGTATAAA 246
Query 120 CAACAAGTCAAAGCTCTGTTCAAGAATCTTTCCAGAGGTCAAAATGAGGCTTCAAGAATG 179
||||| ||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 247 CAACAGGTCAAAGCTTTGTTTAAGAATCTGTCCAGAGGTCAAAATGACGCTTCAAGAATG 306
Query 180 TCGGTTGAAACTGGCCCCTATGTTTTCCATTACATCATAGAAGGACGTGTTTGCTACTTG 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TCCGTTGAAACTGGCCCCTATGTTTTCCATTACATCATAGAAGGACGTGTTTGCTACTTG 366
Query 240 ACAATGTGTGACCGCTCTTACCCAAAGAAACTCGCTTTCCAATACCTGGAAGATCTCAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACAATGTGTGACCGCTCTTACCCAAAGAAACTCGCTTTCCAATACCTGGAAGATCTCAAG 426
Query 300 AATGAATTTGAACGTGTCAATGGACCTAACATTGAAACAGCTGCTCGGCCTTATGCCTTT 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 427 AATGAATTTGAACGTGTCAATGGGCCTAACATTGAAACAGCTGCTCGGCCTTATGCCTTT 486
Query 360 ATTAAATTTGATACATTCATACAGAAAACCAAGAAACTGTACCAAGACACTCGTACACAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 487 ATTAAATTTGATACATTCATACAGAAAACCAAGAAACTGTACCAAGACACTCGTACGCAA 546
Query 420 CGGAATATTGCCAAGTTGAATGATGAACTCTATGAGGTTCATCAAATAATGACGCGGAAT 479
|| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 547 CGAAACATCGCCAAGTTGAATGATGAACTCTATGAGGTTCATCAAATAATGACCCGGAAT 606
Query 480 GTGCAAGAAGTCTTAGGTGTTGGTGAAAAGCTGGACCAGGTGAGCGAGATGTCGAGCCGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GTGCAAGAAGTCTTAGGTGTTGGTGAAAAGCTGGACCAGGTGAGCGAGATGTCGAGCCGG 666
Query 540 TTAACATCTGAATCTCGTATATATGCTGATAAGGCTAAAGATTTGAACCGTCAGGCTTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTAACATCTGAATCTCGTATATATGCTGATAAGGCTAAAGATTTGAACCGTCAGGCTTTG 726
Query 600 ATCCGGAAATGGGCACCAGTCGCAATTGTCTTCGGTGTAGTCTTCCTCCTTTTCTGGGTC 659
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 727 ATCCGAAAATGGGCACCAGTCGCAATTGTGTTCGGTGTAGTCTTCCTCCTTTTCTGGGTC 786
Query 660 AAGACCAAGCTATGGTaaaaaaaaaa 685
|||| |||||||||||||||||||||
Sbjct 787 AAGAACAAGCTATGGTAAAAAAAAAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5