BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920027

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11980.1 | Symbols: RUB3 | ubiquitin-related protein 3 | chr...   209    7e-54


> AT1G11980.1 | Symbols: RUB3 | ubiquitin-related protein 3 | chr1:4045619-4045855 
FORWARD LENGTH=237
Length=237

 Score =  209 bits (113),  Expect = 7e-54
 Identities = 176/205 (86%), Gaps = 10/205 (5%)
 Strand=Plus/Plus

Query  4    ACATTGACATTGATCCGATGGACACGATTGAACGGATCAAAGAACTAATCGAAGAGGAAA  63
            ||||||| ||||| |  | |||||||||||| ||||||||||||| ||||||||| ||||
Sbjct  41   ACATTGAGATTGAGCTAACGGACACGATTGAGCGGATCAAAGAACGAATCGAAGA-GAAA  99

Query  64   -TAGGCATTCCTCCTGATCAACAAAGGCTCGTCTTCGTCTACACTGGGAAACAACTTGCT  122
              |||||||||||||| ||| |||| |   |   ||||||||||||||||||||||||||
Sbjct  100  GAAGGCATTCCTCCTGTTCATCAAA-G---G--ATCGTCTACACTGGGAAACAACTTGCT  153

Query  123  GATGATTTAACCGCCAAACATTATAACCTACAATGTGGTAGTGTTATTCATCTCGTTCTA  182
            ||||||||||||||||||||||| |||||| || ||||||||||| ||||||| ||||| 
Sbjct  154  GATGATTTAACCGCCAAACATTACAACCTAGAACGTGGTAGTGTTCTTCATCTTGTTCTT  213

Query  183  GCTCTTAGAGGTGGGTT-TTACTAA  206
            || ||||||||||| || || ||||
Sbjct  214  GCCCTTAGAGGTGG-TTGTTGCTAA  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10154085298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5