BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920054
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12200.1 | Symbols: | Flavin-binding monooxygenase family p... 2320 0.0
AT1G12140.1 | Symbols: FMO GS-OX5 | flavin-monooxygenase glucos... 364 1e-99
> AT1G12200.1 | Symbols: | Flavin-binding monooxygenase family
protein | chr1:4137533-4140028 FORWARD LENGTH=1685
Length=1685
Score = 2320 bits (1256), Expect = 0.0
Identities = 1378/1438 (96%), Gaps = 4/1438 (0%)
Strand=Plus/Plus
Query 1 AAACTTCACTATAACCTAACATGGC-ACAGAGTCATCCTGATCCAACCACCTCTCGCCAC 59
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 75 AAACTTCACTATAACCTAACATGGCAAC-GAGTCATCCTGATCCAACCACCTCTCGCCAC 133
Query 60 GTGGCAGTAATCGGAGCCGGAGCCGCTGGGTTAGTGGCTGCTCGTGAGCTACGTCGTGAA 119
||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 134 GTGGCAGTAATCGGAGCCGGAGCCGCTGGACTCGTAGCTGCTCGTGAGCTACGTCGTGAA 193
Query 120 GGCCACTCAGTTGTCGTCTTAGAGCGCGGGAGCCAAATCGGAGGCGTGTGGGCTTACACC 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GGCCACTCAGTAGTCGTCTTAGAGCGCGGGAGCCAAATCGGAGGCGTGTGGGCTTACACC 253
Query 180 TCTGAAGTCGAACCTGACCCGCTTAGCCTCGACCCGACCCGACCCGTCGTCCACTCGAGC 239
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 254 TCTCAAGTCGAACCAGACCCGCTTAGCCTCGACCCGACCCGACCCGTCGTCCACTCAAGC 313
Query 240 CTCTACAGATCCTTACGTACCAACATCCC-CAGAGAATGCATGGGTTTCACCGACTTCCC 298
|||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 314 CTCTACAGATCCCTACGTACCAACATCCCTC-GAGAATGCATGGGCTTCACCGACTTCCC 372
Query 299 TTTTGCGACCCGACCACACGACGGGTCGAGGGATCCGAGAAGACATCCAGCTCATACTGA 358
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 373 TTTTGCGACCCGACCACACGACGGGTCAAGGGATCCGAGAAGACATCCGGCTCATACTGA 432
Query 359 GGTTCTTGCTTACCTGCGAGACTTTGCTAAAGAATTCGATATCGAGGAGATGGTAAGGTT 418
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 433 GGTTCTTGCTTACCTGCGAGACTTTGCTAAAGAATTCGATATCGAGGAAATGGTTAGGTT 492
Query 419 CGGGACGGAGGTTGTTAAGGCCGAGCAGATGGCGGCGGAAGGGGAGGAGAGAGGGGAGTG 478
|| |||||||||||||||||| |||||| ||||||| || ||||||||||||||| ||||
Sbjct 493 CGAGACGGAGGTTGTTAAGGCGGAGCAGGTGGCGGCAGAGGGGGAGGAGAGAGGGAAGTG 552
Query 479 GAGGGTTGAATCGAGAAGCTCCGATGGTGTTGCCAACGAGATATACGACGCCGTTGTGGT 538
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 553 GAGGGTTGAATCGAGAAGCTCCGATGGTGTTGTCGACGAGATATACGACGCCGTTGTGGT 612
Query 539 TTGTAACGGACACTATACAGAGCCTCGTCATGCTCTTATCACTGGCATAGATTCATGGCC 598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TTGTAACGGACACTATACCGAGCCTCGTCATGCTCTTATCACTGGCATAGATTCATGGCC 672
Query 599 AGGCAAGCAAATTCACAGCCACAATTACCGTGTTCCTGATCAATTCAAAGATCAGGTGGT 658
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 673 AGGCAAGCAGATTCACAGCCACAATTACCGTGTTCCTGACCAATTCAAAGATCAGGTGGT 732
Query 659 GATAGTGATCGGAAGCTCAGCGAGTGGAGTTGATATATGCAGAGATATAGCGCAGGTCGC 718
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GATAGTGATCGGAAGCTCTGCGAGTGGAGTTGATATATGCAGAGATATAGCGCAGGTCGC 792
Query 719 GAAAGAAGTCCACGTATCATCTAGATCAACTTCACCAGACACCTACGAGAAGCTTCCCGG 778
|||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||
Sbjct 793 GAAAGAAGTCCACGTATCATCTAGATCAACTTCACCGGATACTTACGAGAAGCTTACCGG 852
Query 779 TTACGACAATCTATGGCTTCACTCAACGATTGAAATTGCCCGCGAAGACGGTTCGGTGGT 838
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 853 TTACGAGAATCTATGGCTTCACTCAACGATTCAAATTGCCCGCGAAGACGGTTCGGTGGT 912
Query 839 TTTCGAGAACAGAAAGACAGTTTACGCGGATACCATTATGCATTGTACCGGGTACAAGTA 898
||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 913 TTTCGAGAATGGAAAGACAATTTACGCGGATACCATCATGCATTGTACCGGGTACAAGTA 972
Query 899 TTACTTCCCGTTTCTTGACACGAAAGGTGAAGTGACTGTCGACGATAATCGTGTTGGACC 958
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 973 TTACTTCCCGTTTCTTGACACGAAAGGTGAGGTGACTGTTGACGATAATCGTGTTGGACC 1032
Query 959 GTTGTATAAGCATGTATTTCCTCCAGCTCTTGCCCCGAGCCTTTCGTTTATCGGCTTACC 1018
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1033 GTTGTATAAGCATGTTTTTCCTCCAGCTCTTGCCCCCAGCCTTTCGTTCATCGGCTTACC 1092
Query 1019 ATGGCAGATCACTCCATTCCCGATGTTTGAGCTTCAAAGCAAGTGGGTCGCAGCAGTTTT 1078
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1093 ATGGCAGATCACTCCCTTTCCGATGTTTGAGCTTCAAAGCAAGTGGGTCGCAGCGGTCTT 1152
Query 1079 GTCCGGCCGGGTATCTCTCCCATCGCAAGACGAGATGAGGGAAGACACTAAGGCGTTCTA 1138
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1153 GTCCGGCCGAGTATCTCTCCCATCGCAAGACGAGATGATGGAAGACACTAAGGCATTCTA 1212
Query 1139 CGATAAGCTCGAAGCCTCGGGAATTCCCAAAAGATATACACATTTGATGCCTGATGACTC 1198
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1213 CGATAAGCTAGAAGCCTCGGGAATTCCCAAAAGATATACACATTTGATGCCAGATGACTC 1272
Query 1199 TCAGTTTGAATACGACAATTGGCTTGCGGATCAATGTGAATATCCCCGGATAGAGAAATG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TCAGTTTGAATACGACAATTGGCTTGCGGATCAATGTGAATATCCCCGGATAGAGAAATG 1332
Query 1259 GAGAGAACAAATGTTTTACATAGGTTTCAAGAGAATATATGCACAATCCGCTACATATAG 1318
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1333 GAGAGAACAAATGTTTTACATCGGTTTCAAGAGAATATATGCACAATCCTCTACATATAG 1392
Query 1319 GGATAATTGGGACGATGATCATCTCATCGTAGAAGCATACGATGATTTCGTCAAATTTAT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1393 AGATAATTGGGACGATGATCATCTCATCGTAGAAGCATACGATGATTTCGTCAAATTCAT 1452
Query 1379 GTCAAGCTATCAAGAACTTTTGCCGATGCTAAAAACCTAATGATAATTGACGTGGGAG 1436
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1453 GTCAAGTTATCAAGAACTTTTGCCGATGCTCAAAACCTAATGATAATTGACGTGGGAG 1510
> AT1G12140.1 | Symbols: FMO GS-OX5 | flavin-monooxygenase glucosinolate
S-oxygenase 5 | chr1:4121369-4124595 FORWARD LENGTH=2146
Length=2146
Score = 364 bits (197), Expect = 1e-99
Identities = 830/1118 (74%), Gaps = 114/1118 (10%)
Strand=Plus/Plus
Query 58 ACGTGGCAGTAATCGGAGCCGGAGCCGCTGGGTTAGTGGCTGCTCGTGAGCTACGTCGTG 117
|||||||||| ||||||||||||||||| || | || ||||| | ||||| || || |
Sbjct 52 ACGTGGCAGTGATCGGAGCCGGAGCCGCCGGACTCGTAGCTGCAAGAGAGCTCCGCCGCG 111
Query 118 AAG-GCCACTCAGTTGTCGTCTTAGAGCGCGGGAGC-C-AAA-TCGGAGG-CGTGTGGGC 172
|| ||| | || ||||| || || || || | | ||| ||||||| | | ||||
Sbjct 112 -AGAATCACACCGTCGTCGTTTTCGA--ACGTGA-CTCAAAAGTCGGAGGTC-TCTGGG- 165
Query 173 T-TACAC-CTCTGA-AGTCGAACCTGACCCGCTTAGCCTCGACCCGACCCGACCCGTCGT 229
| ||||| | || | || |||||| ||||||||||||||||| || | |||| || ||||
Sbjct 166 TATACACAC-CTAACAG-CGAACCAGACCCGCTTAGCCTCGATCCAAACCGAACCATCGT 223
Query 230 CCACTCGAGCCTCTACAGATCCT-TACGTACCAACATC-CCCA-GAGAATGCATGGGTTT 286
||| || ||| |||| ||| || | || ||| | ||| |||| |||| ||||||||||
Sbjct 224 CCATTCAAGCGTCTA-TGATTCTCTCCGAACC-A-ATCTCCCACGAGAGTGCATGGGTTA 280
Query 287 CACCGACTTCCCTTTTGCGACC-CGACC---ACACGACGGGTCGAGGGATC-CGAGAAGA 341
|| |||||||| || | | || ||||| | | |||| || || || | |||||||
Sbjct 281 CAGAGACTTCCCCTTCGTG-CCTCGACCTGAAGATGACGAATCAAGAGA-CTCGAGAAGG 338
Query 342 CATCC-AGCTCATACTGAGGTTCTTGCTTACC-TGCGAGACTTTGCTAAAGAATTCGATA 399
| || || ||| | || ||||||||||||| || |||||| |||| ||||||| | |
Sbjct 339 TACCCTAG-TCACAGAGAAGTTCTTGCTTACCTTG-AAGACTTCGCTAGAGAATTC-AAA 395
Query 400 -TCGAGGAGATGGTAAGGTTCGGGACGGAGGTTGTTAAGGCCGAG-CAGATGGCGGCGGA 457
| | ||||||||| | || ||| || || ||| | | | || || | ||
Sbjct 396 CTTGTGGAGATGGTTCGATTTAAGACCGAAGTAGTT-----CTTGTC-GA--GC--CTGA 445
Query 458 AGGGGAGGAGAGAGGGGAGTGGAGGGTTGAATCGAGAAGCTCCGATGGTG-T-TGCC--A 513
| || | ||| | ||||||||| |||| | || || ||||| | | | || |
Sbjct 446 A---GA-TA-AGA----AATGGAGGGTTCAATCCAAAAATTCAGATGG-GATCT-CCAAA 494
Query 514 -ACGAGATATACGACGCCGTTGTGGTTTGTAACGGACACTATACAGAGCCTCGTCATGCT 572
| ||||| | || || ||||| |||||||| ||||| |||||||| ||| | ||||
Sbjct 495 GATGAGATCTTTGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTAGAGTTGCT 554
Query 573 C-T-TATCACTGGCATAGATTCATGGCCAGGCAAGCAAATTCACAGCCACAATTACCGTG 630
| | | || |||| ||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 555 CATGT-TC-CTGGTATAGATTCATGGCCAGGGAAGCAGATTCATAGCCACAATTACCGTG 612
Query 631 TTCCTGATCAATTCAAAGATCAGGTGGTGATAGTGATCGGAAGCTCAGCGAGTGGAGTTG 690
||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||| ||
Sbjct 613 TTCCTGATCAATTCAAAGACCAGGTGGTGGTAGTGATAGGAAATTTTGCGAGTGGAGCTG 672
Query 691 ATAT-ATGCAGAGATATAGCGC-AGGTCGCGAAAGAAGTCCACGTATCA--TCTAGATC- 745
|||| | |||| || ||| || || | || ||||||||||| |||| ||||||||
Sbjct 673 ATATCA-GCAGGGACATAACGGGAG-TGGCTAAAGAAGTCCA--TATCGCGTCTAGATCG 728
Query 746 AACTTCACC-A-GACAC-CTACGAGAAGCTTCCCGGTTACGA-CAATCTATGGCTTCACT 801
|| | || | | |||| || | | || |||||||| | | | |||||||||||||||||
Sbjct 729 AA-TCCATCTAAGACATACT-CAA-AA-CTTCCCGGGT-CAAACAATCTATGGCTTCACT 783
Query 802 CAACGATTGAAATTGCCCGCGAAGACGGTTCGGTGGTTTT-CGAGAACAGAAAGACAGTT 860
| | ||| |||| || | |||||| || || | ||||| | ||||| | ||| |||
Sbjct 784 CTATGATAGAAAGTGTACACGAAGATGGGACGATTGTTTTTC-AGAACGGTAAG---GTT 839
Query 861 -TAC--GCGGATACCATTATGCATTGTACCGGGTACAAGTATTACTTCCCGTTTCTTGAC 917
||| || ||||||||| ||||||| || || ||||| ||| ||||||| ||||| ||
Sbjct 840 GTACAAGCTGATACCATTGTGCATTGCACTGGTTACAAATATCACTTCCCATTTCTCAAC 899
Query 918 ACGAAAGG-TGA-AGTGACTGTCGACGATAA-TCGTGTTGGACCG-TTGTAT-AAGCATG 972
|| || || | | | | ||||| || ||||| | ||||||||||| || || || ||||
Sbjct 900 ACCAATGGCT-ATATT-ACTGTTGAGGATAACT-GTGTTGGACCGCTT-TACGAA-CATG 954
Query 973 TATTTCCTCCAGCTCTTGC-CCCGAGCCTTTCGTTTATCGGCTTACCATGGCA-GATCAC 1030
| ||||| || || ||||| |||| || |||| || ||||| ||||| ||| | || |||
Sbjct 955 TCTTTCCGCCTGCGCTTGCTCCCGGGC-TTTCCTTCATCGGTTTACCCTGG-ATGA-CAC 1011
Query 1031 TCCA-TTCCCGATGTTTGAGCTTCAAAGCAAGTGGGTCGCAGCAGTTTTGTCCGGCCGGG 1089
| || ||| ||||||||||| |||||||||||||| || |||| |||||| |||||||
Sbjct 1012 TGCAATTCTTTATGTTTGAGCTCCAAAGCAAGTGGGTGGCTGCAGCTTTGTCTGGCCGGG 1071
Query 1090 T-ATCTCTCCCATC-GCAAGACGAGA-TGAGGGAAGAC 1124
| | | || || || | |||| || | ||| |||||||
Sbjct 1072 TCA-CACTTCCTTCAG-AAGA-GAAAATGATGGAAGAC 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5