BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920067

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12310.1 | Symbols:  | Calcium-binding EF-hand family protei...   776    0.0  


> AT1G12310.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr1:4187165-4188056 REVERSE LENGTH=892
Length=892

 Score =  776 bits (420),  Expect = 0.0
 Identities = 461/481 (96%), Gaps = 2/481 (0%)
 Strand=Plus/Plus

Query  1    AAACCCGGAAGAATCGAAGAATGGGGAAAGATGGTCTGAGCGACGATCAGGTCTCATCGA  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  91   AAACCCGGAAGAATCGAAAAATGGGGAAAGATGGTCTGAGCGACGATCAGGTCTCGTCGA  150

Query  61   TGAAGGAAGCCTTCATGCTATTCGACACCGACGGCGACGGCAAAATCGCGCCGTCAGAGC  120
            ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct  151  TGAAGGAAGCCTTCATGCTCTTCGACACCGATGGCGACGGCAAAATCGCACCGTCAGAGC  210

Query  121  TCGGGATCCTCATGCGATCTCTCGGCGGAAACCCGACCCAAGCCCAGCTGAAATCCATAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  211  TCGGGATCCTCATGCGATCTCTCGGCGGAAACCCGACCCAAGCCCAGCTGAAATCCATAA  270

Query  181  TCGCATCGGAAAACCTCTCTTCTCCGTTTGATTTCAACAGATTCCTCGATCTCATGGCGA  240
            ||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  271  TCGCATCCGAGAATCTCTCTTCACCGTTTGATTTCAACAGATTCCTCGATCTCATGGCGA  330

Query  241  AACACCTGAAGACGGAACCTTTCGATCGCCAGCTCCGTGACGCATTCAAAGTGCTCGATA  300
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  331  AACATCTGAAGACGGAACCTTTCGATCGCCAGCTCCGTGACGCATTCAAAGTGCTCGATA  390

Query  301  AAGAAGGTACAGGGTTCGTGGCTGTAGCGGATCTGAGGCATATTCTCACCAGTATTGGAG  360
            | |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct  391  AGGAAGGTACCGGGTTCGTTGCTGTGGCGGATCTGAGGCATATTCTGACCAGTATCGGAG  450

Query  361  AGAAGCTGGAGCCTAATGAGTTCGATGAGTGGATCAAGGAGGTGGATGTTGGATCCGATG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  AGAAGCTGGAGCCTAATGAGTTCGATGAGTGGATCAAGGAGGTGGATGTTGGATCCGATG  510

Query  421  GGAAGATCCGGTATGAAGATTTCATAGCAAGGATGGTCGCTAAGTGAGATCTATAATCTT  480
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct  511  GAAAGATCCGGTATGAAGATTTCATAGCAAGGATGGTTGCTAAGTGAGATCTA-A-TCTT  568

Query  481  T  481
            |
Sbjct  569  T  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5