BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920074
Length=2419
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12380.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3801 0.0
AT1G62870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 965 0.0
> AT1G12380.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G62870.1);
Has 173 Blast hits to 170 proteins in 34 species: Archae -
0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses
- 7; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:4214262-4217132
REVERSE LENGTH=2871
Length=2871
Score = 3801 bits (2058), Expect = 0.0
Identities = 2314/2435 (95%), Gaps = 27/2435 (1%)
Strand=Plus/Plus
Query 1 AGAAACttttttttC-TTC-TGATGGCGACGACTAACGCTCACACGGCGGCTCAACAG-- 56
|||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 232 AGAAAC-TTTTTTTCTTTCTTGATGGCGACGACTAACGCTCACACGGCGACTCAACAGAC 290
Query 57 ------A-CTCCACCTCCTCCTCCTCCAGCACCTGCTCCTCCGGCGATCGATGGGTTAAC 109
| | |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 291 ACCACCACCACCACCTCCTCCTCCTCCAGCTCCTGCTCCTCCGGCGATGGATGGGTTAAC 350
Query 110 AACAGACGAGCTAACAGCAAAAGCTTTAAACAAGAGATACGAAGGTTTAATGACGGTGAG 169
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 351 AACAGACGAGCTAACAGCAAAAGCATTAAACAAGAGATACGAAGGTTTAATGACGGTGAG 410
Query 170 AACAAAAGCAGTGAAAGGTAAAGGCGCGTGGTATTGGACTCATCTTGAACCTATCCTCGT 229
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 AACAAAAGCAGTGAAAGGTAAAGGCGCGTGGTATTGGACTCATCTTGAACCAATCCTCGT 470
Query 230 ACGCAACACCGACACTGGTCTCCCTAAAGCCGTGAAGCTCCGTTGTTCTCTATGCGACGC 289
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 471 ACGCAACACCGACACTGGTCTCCCTAAAGCCGTGAAGCTTCGTTGTTCTTTATGCGACGC 530
Query 290 CGTTTTCTCCGCCTCTAATCCTTCACGCACTGCCTCTGAGCATCTCAAACGCGGCACTTG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 531 CGTTTTCTCCGCCTCTAATCCTTCACGCACTGCCTCTGAGCATCTCAAACGCGGCACGTG 590
Query 350 CCCCAATTTCAACTCCGTTACTCCCATTTCCACCATCACTCCTTCTCCTACCTCTTCCTC 409
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCCTAATTTCAACTCTGTTACTCCCATTTCCACCATCACTCCTTCTCCTACCTCTTCCTC 650
Query 410 TTCCTCTCCTCAAACTCATCACCGGAAACGCAACTCCTCCGGCGCTGTCACCACCGCTG- 468
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 651 TTCCTCTCCTCAAACTCATCACCGGAAACGTAACTCCTCCGGCGCTGTCACCACCGC-GA 709
Query 469 TTCCTTCTCGGCTTAATCCTCCTCCCATCGGAGGCTCTTATCACGTCACGCCGATAACCG 528
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TTCCTTCTCGGCTTAACCCTCCTCCCATCGGAGGCTCTTATCACGTCACGCCGATAACCG 769
Query 529 TCGTTGATCCTTCGAGGTTTTGCGGCGGAGAGTTGCATTATACAACTCC---GCCGCCGC 585
| ||||||||||| || || ||||||||||||||||||||| ||||||| ||||||||
Sbjct 770 TTGTTGATCCTTCTAGATTCTGCGGCGGAGAGTTGCATTATTCAACTCCTCCGCCGCCGC 829
Query 586 AGCATTTGATGCTCTCCGGTGGAAAAGACGATTTGGGTCCTTTAGCTATGCTTGAAGACA 645
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 830 AGCATTTGATGCTCTCCGGTGGAAAAGATGACTTGGGTCCTTTAGCTATGCTTGAAGACA 889
Query 646 GTGTGAAGAAGCTTAAGAGTCCTAAACCGTCGCAGACGCAGTCTCTTACCAGATCGCAGA 705
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 890 GTGTGAAGAAGCTTAAGAGTCCTAAACCGTCGCAGACTCAGTCTCTTACCAGATCGCAGA 949
Query 706 TAGAGTCAGCTTTAGATTCTCTCTCTGATTGGGTCTTCGAATCTTGCGGCTCTGTTTCTC 765
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 950 TAGAGTCAGCTTTAGATTCTCTCTCTGATTGGGTCTTCGAGTCCTGCGGCTCTGTTTCTC 1009
Query 766 TCTCGGGTCTTGAGCATCCAAAGTTTCGAGCTTTTTTAACCCAAGTGGGTTTACCAATCA 825
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1010 TCTCGGGTCTTGAGCATCCAAAGTTTCGAGCTTTTTTAACACAAGTTGGTTTACCAATCA 1069
Query 826 TCTCCAAGAGAGATTTCGCCACCACGAGATTGGACTTGAAGTACGAGGAAGCTAGAGCAG 885
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1070 TCTCCAAGAGAGATTTCGCCACCACGAGATTGGACTTGAAGCACGAGGAAGCCAGAGCAG 1129
Query 886 AGGCTGAATCAAGAATCAGAGACGCAATGTTCTTCCAAATCGCATCGGACGGTTGGAAAT 945
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1130 AGGCTGAATCGAGAATCAGAGACGCAATGTTCTTCCAAATCTCATCGGACGGTTGGAAAC 1189
Query 946 CAGGAGAATCCGGCGAGAGTCTCGTGAATTTGATTGTGAATTTACCAAACGGGACGAGTT 1005
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1190 CAGGAGAGTCCGGCGAGAGTCTTGTGAATTTGATTGTGAATTTACCAAACGGGACGAGTT 1249
Query 1006 TGTACAGAAGAGCGGTTCTGGTGAACGGAGCTGTGCCGTCGAACTACGCAGAGGAAGTCT 1065
|||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1250 TGTACAGAAGAGCGGTACTTGTGAACGGAGCTGTGCCGTCTAACTACGCAGAGGAGGTCT 1309
Query 1066 TGTTGGAGACGGTGAAGGGCATTTGTGGAAATTCACCTCAGAGATGTGTTGGGATAGTCT 1125
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGTTGGAGACGGTGAAGGGTATTTGTGGAAATTCACCTCAGAGATGTGTTGGGATAGTCT 1369
Query 1126 CTGATAAGTTTAAGACCAAAGCACTGAGGAATCTTGAGAGTCAGCATCAATGGATGGTGA 1185
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1370 CTGATAAGTTTAAGACCAAAGCACTGAGGAATCTGGAGAGTCAACATCAATGGATGGTGA 1429
Query 1186 ATCTTTCTTGTCAGTTTCAAGGACTCAACAGTTTGATCAAAGATTTCGTAAAAGAGCTTC 1245
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ATCTTTCTTGTCAGTTTCAGGGACTCAACAGTTTGATCAAAGATTTCGTAAAAGAGCTTC 1489
Query 1246 CTTTGTTCAAATCTGTTTCACAAAACTGTGTGAGACTAGCCAAGTTCATCAACAACACGG 1305
|||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1490 CTTTATTCAAATCCGTTTCACAAAACTGTGTGAGACTAGCTAAGTTCATCAATAACACCG 1549
Query 1306 CGCAGATACGAAACGCTCACTGTAAGTATCAGCTGCAGGAACATGGAGAATCTATAATGC 1365
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 1550 CGCAGATACGTAACGCTCACTGTAAGTATCAGTTGCAGGAACATGGCGAATCGATAATGC 1609
Query 1366 TTAGATTGCCTGTACATTGCTATTACGACGATGAACGTAGAAGTTgtagtagtagtagta 1425
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TTAGGTTGCCTTTACATTGCTATTACGACGATGAACGTAGAAGTTGTAGTAGTAGTAGTA 1669
Query 1426 gtagtagtagtagtagtaACAAGGTTTGTTTCTTTGAGCCGTTGTTTAATCTTCTTGAGG 1485
|| | |||||| | |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1670 GT-G--GTAGTA--A----CAAGGTTTGTTTCTACGAGCCGTTGTTTAATCTTCTTGAAG 1720
Query 1486 ATGTGTTGAGTTCCGCTAGAGCAATCCAGTTGGTAATGCATGATGATGCTTGTAAGGTTG 1545
||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||
Sbjct 1721 ATGTGTTGAGTTCCGCTAGAGCAATTCAGTTGGTAGTACATGATGATGCTTGCAAGGTTG 1780
Query 1546 TTTTAATGGAGGATCATATGGCTAGGGAGGTTAGAGAGATGGTTGGGGATGAAGGGTTTT 1605
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1781 TTTTAATGGAGGATCATATGGCTAGGGAGGTTAGAGAGATGGTTGGTGACGAAGGGTTTT 1840
Query 1606 GGAACGAGGTAGAGGCGGTTCACGCTTTGATCAAGCTTGTTAAAGAGATGGCTCGGAGAA 1665
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1841 GGAACGAGGTAGAAGCGGTTCATGCTTTGATCAAGCTTGTTAAAGAGATGGCTCGGAGAA 1900
Query 1666 TAGAGGAAGAGAAGCTGCTTGTTGGGCAATGCCTACCGCTATGGGATGAGCTAAGAGCTA 1725
|||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 1901 TAGAGGAAGAGAAGCTGCTTGTAGGGCAATGCTTACCTCTATGGGATGAGCTAAGAGCTA 1960
Query 1726 AGATTAAAGATTGGGATTCTAAGTTTAATGTAGGAGAAGGACATGTGGAGAAACTCGTTG 1785
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1961 AGGTTAAAGATTGGGATTCTAAGTTTAATGTAGGGGAAGGACATGTGGAGAAAGTCGTTG 2020
Query 1786 AGAGAAGATTCAAGAAGAGTTATCATCCGGCTTGGGCTGCGGCTTTCATACTCGACCCTC 1845
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2021 AGAGAAGATTCAAGAAGAGTTATCATCCGGCTTGGGCTGCGGCTTTTATACTTGACCCTC 2080
Query 1846 TTTACTTGATAAGAGATAGTAGCGGAAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCCG 1905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2081 TTTACTTGATAAGAGATAGTAGCGGAAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCAG 2140
Query 1906 AGCAAGAGAAAGATGTAGATAAGTTGATAACAAGGCTTGTGTCTAGAGACGAGGCACACA 1965
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2141 AGCAAGAGAAAGATGTAGATAAGTTGATAACAAGGCTTGTGTCTAGAGATGAGGCACACA 2200
Query 1966 TTGCTTTGATGGAACTAATGAAATGGAGAACCGAAGGGCTTGATCCTATGTATGCAAGGG 2025
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2201 TTGCGTTGATGGAACTAATGAAATGGAGAACCGAAGGGCTTGATCCTATGTATGCAAGGG 2260
Query 2026 CGGTCCAAATGAAAGAGCGTGACCCGATTTCCGGAAAGATGAGGATAGCGAATCCTCAAA 2085
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2261 CGGTCCAAATGAAAGAGCGTGATCCGGTTTCCGGAAAGATGAGGATAGCGAATCCTCAAA 2320
Query 2086 GCAGTAGACTTGTTTGGGAGACGTATCTTAGCGAATTCAGGTCGCTAGGGAAAGTTGCGG 2145
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 2321 GCAGTAGACTTGTTTGGGAGACGTATCTTAGCGAGTTCAGGTCACTAGGAAAAGTTGCAG 2380
Query 2146 TAAGGCTCATTTTCCTCCACGCGACTACTGGAGGGTTCAAATGCAATTCCTCTCTTTTGA 2205
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 2381 TAAGGCTCATTTTCCTCCACGCTACGACTGGAGGGTTCAAATGCAACTCCTCTCTTTTGA 2440
Query 2206 AATGGGTAAACTCGAACGGGCGGTCACATGCAGCCGTAGATCGAGCTCAAAAGCTGATCT 2265
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2441 AATGGGTAAACTCGAACGGGCGGTCACATGCAGCCGTTGATCGAGCTCAAAAGCTGATCT 2500
Query 2266 TCATATCCGCTAACTCGAAGTTCGAAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATG 2325
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 TCATATCCGCTAACTCGAAATTCGAAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATG 2560
Query 2326 CGGAGCTGCTCGCTATGGCTAACGGTGATGATCATCTGCTTAACGATGTTCTTGTCGATA 2385
| ||||| |||||||||||||| ||||| || ||| |||| |||||||||||||||||||
Sbjct 2561 CAGAGCTTCTCGCTATGGCTAATGGTGACGACCATATGCTAAACGATGTTCTTGTCGATA 2620
Query 2386 CATCCTCGGTGTGACATTTGAATCTCTTTTT-GAT 2419
| ||||| ||||||||||||||||||||||| |||
Sbjct 2621 CGTCCTCAGTGTGACATTTGAATCTCTTTTTTGAT 2655
> AT1G62870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G12380.1);
Has 351 Blast hits to 343 proteins in 42 species: Archae -
2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses
- 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr1:23284012-23286760
REVERSE LENGTH=2749
Length=2749
Score = 965 bits (522), Expect = 0.0
Identities = 820/962 (85%), Gaps = 27/962 (3%)
Strand=Plus/Plus
Query 1454 TTTCTTTGAGCCGTTGTTTAATCTTCTTGAGGATGTG-TTGAGTTCCGCTAGAGCAATCC 1512
||| |||||||| |||| |||||| |||||||||||| || |||| ||||||||| || |
Sbjct 1593 TTTGTTTGAGCCATTGTATAATCTCCTTGAGGATGTGCTT-AGTTTCGCTAGAGCGATTC 1651
Query 1513 AGTTGGTAATGCATGATGATGCT-TGTAAGGTTGTTTTAATGGAGGATCATATGGCTAGG 1571
|| |||| ||||||||||||| | ||||||| |||| ||||||||||||||||||||||
Sbjct 1652 AGCTGGTGATGCATGATGATG-TGTGTAAGGCTGTTCTAATGGAGGATCATATGGCTAGA 1710
Query 1572 GAGGTTAGAGAGATGGTTGGGGATGAAGGGTTTTGGAACGAGGTAGAGGCGGTTCACGCT 1631
|||||| | || |||||||| |||| ||||||||||||||||||||||||||| | |
Sbjct 1711 GAGGTTGGTGAAATGGTTGGAGATGTCGGGTTTTGGAACGAGGTAGAGGCGGTTTA-TTT 1769
Query 1632 -TTGATCAAGCTTGTTAAAGAGATGGCTCGGAGAATAGAGGAAGAGAAG-CTGCTT-GTT 1688
||| | |||||||||||||| ||||||||||||||||||||||||| | || || ||
Sbjct 1770 GTTGTTGAAGCTTGTTAAAGAAATGGCTCGGAGAATAGAGGAAGAGAGGCCT--TTGGTA 1827
Query 1689 GGGCAATGCCTACCGCTATGGGATGAGCTAAGAG-CTAAGATTAAAGATTGGGATTCTAA 1747
|||||||| |||||||||||||||||||||| | | ||||| ||||||||| || | ||
Sbjct 1828 GGGCAATGTTTACCGCTATGGGATGAGCTAAG-GTCCAAGATAAAAGATTGGTATGCAAA 1886
Query 1748 GTTTAATGTAG--G-AGA-AGGACATGTGGAGAA-ACTCGTTGAGAGAAGATTCAAGAAG 1802
||| ||||| | | ||| ||| || || ||||| | |||||||||||||||||||||||
Sbjct 1887 GTTCAATGTTGTTGAAGAGAGG-CAAGTAGAGAAGA-TCGTTGAGAGAAGATTCAAGAAG 1944
Query 1803 AGTTATCATCCGGCTTGGGCTGCGGC-TTTCATACTCGACCCTCTTTACTTGATAAGAGA 1861
|||||||| || |||||||||||||| ||| ||||| || || ||||||||||||| |||
Sbjct 1945 AGTTATCACCCAGCTTGGGCTGCGGCGTTT-ATACTTGATCCGCTTTACTTGATAAAAGA 2003
Query 1862 TAGTAGCGGAAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCC-GAGCAAGAGAAAGATG 1920
||||||||||| ||||||||||| |||||||| ||||| ||| ||||||||||||||||
Sbjct 2004 CAGTAGCGGAAAATATCTTCCTCCATTCAAATGCTTGTC-CCCGGAGCAAGAGAAAGATG 2062
Query 1921 TAGATAAGTTGATAACAAGGCTTGTGTCTAGAGACGAGGCACACATTGCTTTGATGGAAC 1980
| |||||||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct 2063 TTGATAAGTTAATAACAAGGCTTGTGTCTAGAGACGAGGCACATATCGCGATGATGGAGC 2122
Query 1981 TAATGAAATGGAGAACCGAAGGGCTTGATCCTATGTATGCAAGGGCGGTCCAAATGAAAG 2040
| |||||||||||||| |||||||||||||| | || ||||||||||| |||||||| |
Sbjct 2123 TGATGAAATGGAGAACAGAAGGGCTTGATCCGGTTTACGCAAGGGCGGTTCAAATGAAGG 2182
Query 2041 AGCGTGACCC-GATTTCCGG-AAAGATGAGGATAGCGAATCCTCAAAGCAGTAGACTTGT 2098
|| | || || | |||| || ||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 2183 AGAGAGATCCTG-TTTCGGGGAAA-ATGAGGATAGCTAATCCACAAAGTAGTAGACTTGT 2240
Query 2099 TTGGGAGACGTATCTTAGCGAATTCAGGTCGCTAGGGAAAGTTGCGGTAAGGCTCATTTT 2158
|||||| || |||||||| || |||||||| | |||| |||||| || ||||| |||||
Sbjct 2241 TTGGGAAACTTATCTTAGTGAGTTCAGGTCATTGGGGAGAGTTGCAGTTAGGCTTATTTT 2300
Query 2159 CCTCCACGCGACTACTGGAGGGTTCAAATGCAATTCCTCTCTTTTGAAATGGGTAAACTC 2218
||||| || ||| || | || |||||||||||||||||| |||||| ||||||||| ||
Sbjct 2301 TCTCCATGCAACTTCTTGTGGTTTCAAATGCAATTCCTCTGTTTTGAGATGGGTAAATTC 2360
Query 2219 GAACGGGCGGTCACATGCAGCCGTAGATCGAGCTCAAAAGCTGATCTTCATATCCGCTAA 2278
||| || | |||| |||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 2361 GAATGGAAGATCACGCGCAGCCGTGGATCGAGCTCAAAAGTTGATCTTTATATCCGCTAA 2420
Query 2279 CTCGAAGTTCGAAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATGCGGAGCTGCTCGC 2338
|||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||
Sbjct 2421 CTCGAAATTCGAAAGGAGAGACTTCTCCAACGAGGAAGAGAGAGATGCGGAGCTGCTCGC 2480
Query 2339 TATGGCTAACGGTGATGATCATCTGCTTAACGATGTTCTTGTCGATACATCCTCGGTGTG 2398
|||||| || || || ||| || |||| ||||||||||| ||||||||||||| |||||
Sbjct 2481 TATGGCGAATGGCGAAGATGATGTGCTAAACGATGTTCTCATCGATACATCCTCAGTGTG 2540
Query 2399 AC 2400
||
Sbjct 2541 AC 2542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120129904185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5