BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920075
Length=457
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12390.1 | Symbols: | Cornichon family protein | chr1:42201... 763 0.0
AT1G12340.1 | Symbols: | Cornichon family protein | chr1:41973... 571 2e-162
> AT1G12390.1 | Symbols: | Cornichon family protein | chr1:4220100-4221774
FORWARD LENGTH=954
Length=954
Score = 763 bits (413), Expect = 0.0
Identities = 445/460 (97%), Gaps = 3/460 (1%)
Strand=Plus/Plus
Query 1 TTGTCGGAACCAGAAGGAGGAAGATGGGAGATATCTGGGCATGGCTTATTTCCTTCTTCT 60
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 225 TTGTCGGAACCAAAAGGAGGAAGATGGGAGATATCTGGACATGGCTTATTTCCTTCTTCT 284
Query 61 TCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCCGATCTCGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 285 TCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCGGATCTCGAGT 344
Query 121 TTGATTACATCAACCCTTACGACTCTGCCTCCAGAATAAATTCAGTGGTTTTACCTGAGT 180
|||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||
Sbjct 345 TTGATTACATCAACCCTTACGACTCTGCGTCGAGAATAAACTCAGTGGTTTTACCGGAGT 404
Query 181 TCATTGTGCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGATCATGACAC 240
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 405 TCATTGTTCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGTTCATGACAC 464
Query 241 TCTTATGTCTCCCCTATCTATACTACAACTTCCAACTTTACTCGAAACGACAACACTTGG 300
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 465 TCTTATGTCTCCCCTATCTATACTACAACTTCCATCTTTACTCGAAGCGACAACACTTAG 524
Query 301 TAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGC 584
Query 361 TTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGG 644
Query 421 ATGATTACGAGGACTGACTAATGAA-AA--CATGGTCCAT 457
||||||||||||||||||||||||| || ||||||||||
Sbjct 645 ATGATTACGAGGACTGACTAATGAAGAAGACATGGTCCAT 684
> AT1G12340.1 | Symbols: | Cornichon family protein | chr1:4197396-4198310
FORWARD LENGTH=668
Length=668
Score = 571 bits (309), Expect = 2e-162
Identities = 347/365 (95%), Gaps = 3/365 (1%)
Strand=Plus/Plus
Query 96 CTTGTTTGCTTAGCCGATCTCGAGTTTGATTACATCAACCCTTACGACTCTGCCTCCAGA 155
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 49 CTTGTTTGCTTAGCGGATCTCGAGTTTGATTATATCAACCCTTACGACTCTGCGTCGAGA 108
Query 156 ATAAATTCAGTGGTTTTACCTGAGTTCATTGTGCAAGGAGTTCTATGCGTATTCTACCTC 215
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 109 ATAAACTCAGTGGTTTTACCGGAGTTCATTGTTCAAGGAGTTCTATGCGTATTCTACCTC 168
Query 216 CTAACAGGACACTGGATCATGACACTCTTATGTCTCCCCTATCTATACTACAACTTCCAA 275
||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||
Sbjct 169 CTAACAGGACACTGGTTCATGACACTCTTATGTCTCCCCTATCTCTACTACAATTTCCAT 228
Query 276 CTTTACTCGAAACGACAACACTTGGTAGATGTCACCGAGATCTTCAATTTGCTTAACTGG 335
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 229 CTTTACTCGAAGCGACAACACTTAGTAGATGTCACCGAGATCTTCAATTTGCTAAACTGG 288
Query 336 GAAAAGAAGAAACGGCTGTTCAAGCTTGCTTACATTGTCCTTAACCTCTTTCTCACTATC 395
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GAGAAGAAGAAACGGCTGTTCAAGCTTGCTTACATTGTCCTTAACCTCTTTCTCACTATC 348
Query 396 TTCTGGATGATTTATTCGGCGCTGGATGATTACGAGGACTGACTAATGAA-AA--CATGG 452
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 349 TTCTGGATGATTTATTCGGCGCTGGATGATTACGAGGACTGACTAATGAAGAAGACATGG 408
Query 453 TCCAT 457
|||||
Sbjct 409 TCCAT 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21765935317
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5