BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920079

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12423.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   158    3e-38


> AT1G12423.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:4231027-4231146 
REVERSE LENGTH=120
Length=120

 Score =  158 bits (85),  Expect = 3e-38
 Identities = 107/117 (91%), Gaps = 3/117 (3%)
 Strand=Plus/Plus

Query  21   ATGCCGTGGCTCCCACCGGTTACCTATTACCGGCCGTTCCCATTTCCGGCGGAGAATCGT  80
            ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  1    ATGACGTGGCTCCCACCGGTTACCTATTACCGTCCGTTCCCGTTTCCGGCGGAGAATCGT  60

Query  81   ACACATTTTCCCGCTAAAACCTACGTGGAAAGACAGAACAAAAGA-AA--TAATTTT  134
             ||||||||||||||||| || ||||||||||||||||||| ||| ||  |||||||
Sbjct  61   TCACATTTTCCCGCTAAATCCGACGTGGAAAGACAGAACAAGAGACAAAATAATTTT  117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5