BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920096
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12600.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transpo... 1740 0.0
> AT1G12600.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transporter
family | chr1:4286204-4288878 REVERSE LENGTH=1279
Length=1279
Score = 1740 bits (942), Expect = 0.0
Identities = 1037/1083 (96%), Gaps = 6/1083 (1%)
Strand=Plus/Plus
Query 3 TATT-TTTCTTTCAAGATCATGAAGATTAACAGCGAAGAACAAATGATAAAACTGTTTGG 61
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 TATTCTTTTTTTCAAGATCATGAAGACTAACAGCGAAGAACAAATGATAAAACTGTTTGG 60
Query 62 AATTCCTCTTTCTGATAAACCCAGATGGCAACAATTTCTCATCTGTTCTTCTGGATTT-T 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 61 AATTCCTCTTTCTGATAAACCCAGATGGCAACAATTTCTCATCTGTTCTTCTGG-TTTCT 119
Query 121 TCTTTGGTTATCTTGTTAATGGCATCTGTGAGGAATATGTGTACAACCGGCTTAAATTCA 180
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 TCTTTGGTTACCTCGTTAATGGCATCTGCGAGGAATATGTGTACAACCGGCTTAAATTCA 179
Query 181 GTTATGGATGGTATTTCACGTTTGCGCAAGGATTGGTGTACATTG-CTCTCATTTACATA 239
||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 180 GTTATGGATGGTATTTCACGTTTGCGCAAGGATTGGTGTACATTGCCT-TGATTTACATG 238
Query 240 TATGGCTTCAGGACGAAGCAAATGGTGAATCCATGGAAGACTTACGTGAAACTATCTGGT 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 TATGGCTTCAGGACGAAGCAAATGGTTAATCCATGGAAGACTTACGTGAAACTATCTGGT 298
Query 300 GTTCTTATGGGTTCTCATGGCCTCACCAAAGGCTCCTTGGCTTATCTCAATTATCCTGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTCTTATGGGTTCTCATGGCCTCACCAAAGGCTCCTTGGCTTATCTCAATTATCCTGCT 358
Query 360 CAAATCATGTTCAAATCCACTAAGGTTTTACCGGTTATGGTAATGGGAGCTTTTATACCA 419
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 359 CAAATCATGTTCAAATCCACTAAGGTTTTGCCGGTTATGGTTATGGGAGCTTTTATACCA 418
Query 420 GGGTTGAGAAGAAAATACCCTGTCCACGAGTACATATCGGCTATGCTACTTGTAATTGGT 479
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 419 GGGTTGAGAAGAAAATACCCTGTCCACGAGTACATATCTGCTATGTTACTTGTAATTGGT 478
Query 480 CTGATCATATTCACATTAGCTGATGCCCATACCTCCCCAAACTTCAGTATAGTTGGGGTT 539
|| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 CTCATCTTATTCACATTGGCTGATGCCCATACCTCCCCAAACTTCAGTATAATTGGGGTT 538
Query 540 GTGATGATCTCGGGCGCTCTCATCATGGACGCTTTTCTCGGTAACTTGCAAGAAGCTATC 599
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 539 ATGATGATCTCGGGCGCTCTCATCATGGACGCTTTTCTTGGTAACTTACAAGAAGCTATC 598
Query 600 TTCACGATGAATCCTGAGACAACACAAATGGAGATGTTGTTCTGCTCGACGGTAGTTGGC 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 TTCACGATGAATCCTGAGACAACACAAATGGAGATGTTGTTTTGCTCGACGGTAGTTGGC 658
Query 660 TTACCGTTCTTACTTGCACCAATGTTTCTTACCGGAGAGCTTTTCAGAGCTTGGAATTCA 719
|||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||
Sbjct 659 TTACCGTTCTTACTTGCACCGATGATTCTTACTGGAGAGCTTTTCACAGCTTGGAATTCA 718
Query 720 TGTGCTCAACATCCATATGTGTATGGAGTGTTGGTGTTCGAAGCCATGGCTACATTTATC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTGCTCAACATCCATATGTGTATGGAGTGTTGGTGTTCGAAGCCATGGCTACATTTATC 778
Query 780 GGACAAGTCTCCGTTCTATCCCTCATTGCACTCTTTGGCGCAGCCACAACCGCTATGATA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGACAAGTCTCCGTTCTATCCCTCATTGCACTCTTTGGCGCAGCCACAACCGCTATGATA 838
Query 840 ACGACGGCGAGAAAAGCGGTAACGCTGTTACTGTCCTACTTGATATTCACAAAGCCTTTA 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 ACGACGGCGAGAAAAGCGGTAACGCTGTTACTGTCCTATTTGATATTCACAAAGCCTTTA 898
Query 900 ACGGAACAGCACGGCACAGGATTGTTACTCATCTCTATGGGCATTATTCTCAAGATGGTT 959
|| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 ACTGAACAGCACGGTACGGGATTGTTACTCATCTTTATGGGCATTATTCTCAAGATGGTT 958
Query 960 CCTGATCCAAATCCAAACACGAAATCTTCGGGTTCGAGTCAGACACCCGGGAAGTTGGAA 1019
|| |||||||| |||||| | ||||||||||||||| ||||||||||||| || ||||||
Sbjct 959 CCGGATCCAAACCCAAACCCCAAATCTTCGGGTTCGGGTCAGACACCCGGAAAATTGGAA 1018
Query 1020 CGGGTTAAGTTTGAGAAGGAAGACGATGAAGAGAGCCGGCCTTTGGTCTAATAC-CGACG 1078
||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct 1019 CGGGTTAAGTTTGAGAAGGAAGACGATGAAGAGAGTCGTCCATTGGTCTAATAAACGACG 1078
Query 1079 AGA 1081
|||
Sbjct 1079 AGA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5