BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920105
Length=265
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10630.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 318 1e-86
> AT3G10630.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr3:3321463-3323211 REVERSE LENGTH=1749
Length=1749
Score = 318 bits (172), Expect = 1e-86
Identities = 223/248 (90%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 19 AGATGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTAG 78
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1264 AGATGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTGG 1323
Query 79 ATAAGCTTAGGGTTCTAATGAGGCATGTAATGAGTAATCCTTATGAGGCTAAGGTTAAAG 138
||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct 1324 ATAAGCTGAGGGTTCTAATGAGGCGTGTAATGAGTAACCCTGATGAGGCTAAGGTTAAAG 1383
Query 139 GCAACCGTGGAAGAGACGACATGGTTCA-GAAGTTTACACCTGAGGTCGTTACTGAGTTT 197
| || ||||||||||| |||||||| || ||| ||| | |||||||| ||| || || ||
Sbjct 1384 GAAAACGTGGAAGAGATGACATGGT-CAAGAATTTTGCTCCTGAGGTTGTTGCTAAGGTT 1442
Query 198 GTTGCGAATCAAATTGAGATAATCTTTGATGAGCAAAGAAGAACATGACAGGATCTCACA 257
|| ||| ||||||| | || ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1443 GTAGCGGATCAAATAGCGAGAATCTTTGATGAGAAAATAAGAACATGACAGGATCTCACA 1502
Query 258 CTTTGCTT 265
|||| |||
Sbjct 1503 CTTTACTT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12114527509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5