BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920107

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07717.1 | Symbols:  | pseudogene, similar to NADH-ubiquinon...   117    2e-25


> AT2G07717.1 | Symbols:  | pseudogene, similar to NADH-ubiquinone 
oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp 
match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM 
NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). 
(Field mustard) {Brassica campestris} | chr2:3418229-3424177 
FORWARD LENGTH=5949
Length=5949

 Score =  117 bits (63),  Expect = 2e-25
 Identities = 70/73 (96%), Gaps = 1/73 (1%)
 Strand=Plus/Minus

Query  559   TGGATATCTCTGCGCCCCCCGCCCCGAAACTGACCCACAGCACAGCGCCCATTCGCTTTG  618
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3604  TGG-TATCTCTGCGCCCCCCGCCCCGAAACTGACCCACAGCACAGCGCCCATTCGCTTTG  3546

Query  619   GGGGCGGGAAGGC  631
              | ||||||||||
Sbjct  3545  CGCGCGGGAAGGC  3533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34561093136


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5