BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920109

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12630.1 | Symbols:  | Integrase-type DNA-binding superfamil...   846    0.0  


> AT1G12630.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr1:4298889-4299475 FORWARD LENGTH=587
Length=587

 Score =  846 bits (458),  Expect = 0.0
 Identities = 546/589 (93%), Gaps = 4/589 (1%)
 Strand=Plus/Plus

Query  1    CTAATAGTATGAATAATACAATGGGTTCTTCCAGCTTAGGTAGCCGGAGAAAGGATCCGG  60
            ||||||||||||||| | |||||| |||| || |||||||||||||||||||||||||||
Sbjct  1    CTAATAGTATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGG  60

Query  61   CGTACAGAGGAATCCGGTGCCGAAGTGGTAAATGGGTCTCCGAGATTCGTGAGCCTAAGA  120
             ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct  61   TGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGA  120

Query  121  AAACCACGAGAATCTGGCTTGGAACTTACCCCACGGCAGAGATGGCAGCCGCCGCCTACG  180
            ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct  121  AAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATG  180

Query  181  ATGTGGCTGCTCTGGCTCTTAAAGGAAGAGGAGCCGTCTTGAACTTCCCTGGATCCGCCC  240
            ||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | 
Sbjct  181  ATGTGGCTGCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCG  240

Query  241  AGTCATACCCGGTTCCTGAATCAAAATCGGCAGCGGATATACGAACCGCGGCGGCAGCTG  300
             ||||||||||||||||||||||| ||| ||||| ||||||||| |||| |||||||| |
Sbjct  241  GGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCG  300

Query  301  CAGCAGCAATGAAGGGATGCGAGGAAGGGGAGGAGGAGAAAGAGGCAACGGAGAAGAATA  360
            ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
Sbjct  301  CAGCAGCAATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGA  360

Query  361  GTAGTATTTCGCAGTTC-AGAGCGCGTGAGAACCACGTAAATAATGA-GGTGGCGTCTTC  418
            |||||| |||| || || ||||||||||||  ||||||| ||||||| | |||  |||||
Sbjct  361  GTAGTAGTTCGAAG-TCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGG-ATCTTC  418

Query  419  GTCATGGTGTGGGACAGAGTTTATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCT  478
            ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  419  GTCGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCT  478

Query  479  GGCTAATATGGCAGAAGGGATGATGGTTGCGCCACCGTCGTGGATGGGTTCTCGGCCGTC  538
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  479  GGCTAATATGGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTC  538

Query  539  GGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGGTATTGA  587
            |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  539  GGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5