BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920114

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12665.1 | Symbols:  | Encodes a Plant thionin family protei...   348    2e-95


> AT1G12665.1 | Symbols:  | Encodes a Plant thionin family protein 
| chr1:4312331-4312935 FORWARD LENGTH=519
Length=519

 Score =  348 bits (188),  Expect = 2e-95
 Identities = 236/259 (91%), Gaps = 3/259 (1%)
 Strand=Plus/Plus

Query  4    TTCT-CCTTGAAAAAAGAATGGAGGGTAAAAGCCTAGTTGCGGTTTTGGTGACAATGATG  62
            |||| |||  |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  50   TTCTCCCTAAAAAAAAGAATGGAGGGTAAAAGCCTAGTTGCGATTTTGGTGACAATGATG  109

Query  63   GTGATGGGAAACCTTCTTCCTCAAACAGAGGCTCAAAAGATACCATTTATGCAATGTTAT  122
            ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  110  GTGATAGGAAACCTTCTTCCTCAAACAGAGGCTCAAAAGATACCTTTTATGCAATGTTTT  169

Query  123  CCAGCTTGTATTG-TAGTGTGTAAGAGTGAGTCAACGTTTCCAAAGTTTCTTAAATGTCC  181
            ||||||||||| | ||||||||||||||||||||| |||||||||||||||||  |||||
Sbjct  170  CCAGCTTGTAT-GATAGTGTGTAAGAGTGAGTCAAAGTTTCCAAAGTTTCTTACTTGTCC  228

Query  182  TTTTACATGTCTCAGAACATGtcttcatcctccgtctcctcctccttctccttctccgtc  241
              | |||||||||| |||||||||||||||||||||||| |||||||| ||  | |||||
Sbjct  229  AATAACATGTCTCAAAACATGTCTTCATCCTCCGTCTCCGCCTCCTTCCCCGCCCCCGTC  288

Query  242  cccttcgccttctccttct  260
             ||||| ||||||||||||
Sbjct  289  TCCTTCTCCTTCTCCTTCT  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14376576214


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5