BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920121

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12790.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: RuvA doma...   643    0.0  


> AT1G12790.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: RuvA domain 
2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins 
in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; 
Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:4359151-4361272 REVERSE LENGTH=1172
Length=1172

 Score =  643 bits (348),  Expect = 0.0
 Identities = 466/518 (90%), Gaps = 28/518 (5%)
 Strand=Plus/Plus

Query  49   GTGTTTCTATTGCTTCTGTTTTTGTCACAAAATGGGATTGTTCCAATGTTGCTTCCATCT  108
            ||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||
Sbjct  271  GTGTTTCTATTGCTTTTGTTTTTGTGACTAAATGGGATTTTTCCAATGTTGCTTCCATCT  330

Query  109  TCAACAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCCACACTTT  168
            ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  331  TCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCTACACTTT  390

Query  169  CAACTAAAGAACAGAGTGATTCATTCATGCGATCTTACTTCCACTCGATAAGTCTTTTTG  228
            |||||||||| ||||||||||| || |||||||||||| |    ||       |      
Sbjct  391  CAACTAAAGAGCAGAGTGATTCTTTTATGCGATCTTAC-T----TC-------C------  432

Query  229  TAGATATGAGATGGAGTTTGGGAAACCTGCATTTGTACAAGTCACTGATGCTGAGATGGG  288
             | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  433  -A-ATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTGAGATGGG  490

Query  289  ATTCGAGAAGATTGTTAAGATTGCTCACTCTCGTGGGGTGTTGCAAGCAACAGAAGGTGG  348
            ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct  491  ATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTG-TGCAAGCAACAGAAGGTGG  549

Query  349  CGTCTAAGCTCAAGGTTGAGAGAAAGCGAATTGTGCAGGATACAGACATTTTCATAAGAT  408
            | |||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||
Sbjct  550  CCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCATCAGAT  609

Query  409  TTGTCACATCTATACCCAACATTAACAAACATGATGCAAACACGCTGTGCCAGGCTATTG  468
            |||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct  610  TTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGGCTATTG  669

Query  469  GTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAATTAGCAAACACA  528
            ||||||| ||||||||||||||||||||||||||||||||||||||||  | ||  ||  
Sbjct  670  GTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAA--A-CA--CA--  722

Query  529  GATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTT  566
            |||||||||||| |||||||||| ||||||||||||||
Sbjct  723  GATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTT  760



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5