BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920121 Length=567 Score E Sequences producing significant alignments: (Bits) Value AT1G12790.1 | Symbols: | CONTAINS InterPro DOMAIN/s: RuvA doma... 643 0.0 > AT1G12790.1 | Symbols: | CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4359151-4361272 REVERSE LENGTH=1172 Length=1172 Score = 643 bits (348), Expect = 0.0 Identities = 466/518 (90%), Gaps = 28/518 (5%) Strand=Plus/Plus Query 49 GTGTTTCTATTGCTTCTGTTTTTGTCACAAAATGGGATTGTTCCAATGTTGCTTCCATCT 108 ||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||| Sbjct 271 GTGTTTCTATTGCTTTTGTTTTTGTGACTAAATGGGATTTTTCCAATGTTGCTTCCATCT 330 Query 109 TCAACAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCCACACTTT 168 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 331 TCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGCGCAACTTTATGTTGTTGCTACACTTT 390 Query 169 CAACTAAAGAACAGAGTGATTCATTCATGCGATCTTACTTCCACTCGATAAGTCTTTTTG 228 |||||||||| ||||||||||| || |||||||||||| | || | Sbjct 391 CAACTAAAGAGCAGAGTGATTCTTTTATGCGATCTTAC-T----TC-------C------ 432 Query 229 TAGATATGAGATGGAGTTTGGGAAACCTGCATTTGTACAAGTCACTGATGCTGAGATGGG 288 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 433 -A-ATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTGAGATGGG 490 Query 289 ATTCGAGAAGATTGTTAAGATTGCTCACTCTCGTGGGGTGTTGCAAGCAACAGAAGGTGG 348 ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 491 ATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTG-TGCAAGCAACAGAAGGTGG 549 Query 349 CGTCTAAGCTCAAGGTTGAGAGAAAGCGAATTGTGCAGGATACAGACATTTTCATAAGAT 408 | |||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||| Sbjct 550 CCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCATCAGAT 609 Query 409 TTGTCACATCTATACCCAACATTAACAAACATGATGCAAACACGCTGTGCCAGGCTATTG 468 |||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||| Sbjct 610 TTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGGCTATTG 669 Query 469 GTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAATTAGCAAACACA 528 ||||||| |||||||||||||||||||||||||||||||||||||||| | || || Sbjct 670 GTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAA--A-CA--CA-- 722 Query 529 GATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTT 566 |||||||||||| |||||||||| |||||||||||||| Sbjct 723 GATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTT 760 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27226907674 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5