BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920122
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galac... 809 0.0
AT1G63180.1 | Symbols: UGE3 | UDP-D-glucose/UDP-D-galactose 4-e... 510 7e-144
AT1G13195.1 | Symbols: | RING/U-box superfamily protein | chr1... 150 2e-35
> AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galactose
4-epimerase 1 | chr1:4355926-4358328 REVERSE LENGTH=1462
Length=1462
Score = 809 bits (438), Expect = 0.0
Identities = 465/478 (97%), Gaps = 1/478 (0%)
Strand=Plus/Plus
Query 364 AGGATCCAAAAGGCATCCCCAATAATCTCATGCCTTACATCCAACAAGTGGCCGTTGGAC 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 807 AGGATCCAAAAGGCATCCCCAATAACCTCATGCCTTACATCCAACAAGTGGCCGTTGGAC 866
Query 424 GTTTACTGGAACTCAATGTCTATGGACATGACTATCCCACCAAGGATGGTAGTGCGGTAA 483
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 867 GTTTACCGGAACTCAATGTCTATGGACATGACTATCCCACCGAGGATGGTAGTGCGGTAA 926
Query 484 GAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTAT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTAT 986
Query 544 TTGCTGATCCAAAGATTGGTTGTACTGCTTACAATCTAGGCACTGGTCAAGGAACGTCTG 603
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 987 TTGCTGATCCAAAGATTGGTTGTACTGCTTACAATCTAGGGACTGGTCAAGGAACGTCTG 1046
Query 604 TGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCaaaaaaaTCCCGATCAAGCTTT 663
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1047 TGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATTAAGCTCT 1106
Query 664 GTCCGAGAAGGTCAGGAGATGCAACAGGAGTTTATGCTTCAACAGAGAAGGCTGAGAAAG 723
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1107 GTCCGAGAAGGTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCTGAGAAAG 1166
Query 724 AACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAATTGGG 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1167 AACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAAATGGG 1226
Query 784 CAAACAACAATCCATGGGGTTACCAGAAGAAGCTTTGAATTTACTTCCTTT-TTTGGA 840
||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 1227 CAAACAATAATCCATGGGGTTACCAGAATAAGCTTTGAATTTACTTCTTTTGTTTGGA 1284
Score = 401 bits (217), Expect = 4e-111
Identities = 231/238 (97%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 128 ATTTGATACTGCGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGGCAACCC 187
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 457 ATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGAAAACCC 516
Query 188 TCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAA 576
Query 248 GTACAACTGCAAAATGATGGTGTTTTCATCATCTGCAACTGTTTATGGACAACCTGAAAA 307
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 577 GTACAACTGCAAAATGATGGTGTTTTCATCTTCTGCCACTGTTTATGGACAACCTGAAAA 636
Query 308 GATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTTTGGTCGTACTAAG 365
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 637 GATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAG 694
> AT1G63180.1 | Symbols: UGE3 | UDP-D-glucose/UDP-D-galactose 4-epimerase
3 | chr1:23427409-23429603 REVERSE LENGTH=1425
Length=1425
Score = 510 bits (276), Expect = 7e-144
Identities = 399/459 (87%), Gaps = 6/459 (1%)
Strand=Plus/Plus
Query 366 GATCCAAAAGGCATCCCCAATAATCTCATGCCTTACATCCAACAAGTGGCCGTTGGACGT 425
|||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||| |
Sbjct 820 GATCCAAAGGGCATACCGAATAATCTCATGCCTTATATCCAACAAGTGGCGGTTGGAAGA 879
Query 426 TTA-CTGGAACTCAATGTCTATGGACATGACTATCCCACCAAGGATGGTAGTGCGGTAAG 484
||| || ||||||||||| | ||||||||| ||||| |||| ||||||||| ||||| ||
Sbjct 880 TTACCT-GAACTCAATGTATTTGGACATGATTATCCTACCATGGATGGTAGCGCGGTTAG 938
Query 485 AGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTATT 544
||||||||||||||| ||||||||||||||||||||| | |||||| | | || | ||
Sbjct 939 AGACTACATCCATGTAATGGATTTAGCAGATGGCCATGTGGCTGCGTTAAACAAATTGTT 998
Query 545 TGCTGATC-CAAAGATTGGTTGTACTGCTTACAATCTAGGCACTGGTCAAGGAACGTCTG 603
| | || | |||||||||| ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 999 TTCAGA-CTCAAAGATTGGCTGTACTGCTTATAATCTTGGCACTGGTCAAGGAACTTCTG 1057
Query 604 TGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCaaaaaaaTCCCGATCAAGCTTT 663
| |||||||||||| | |||||||||||||||| ||||| ||||| || |||||||| |
Sbjct 1058 TCTTAGAAATGGTTTCTTCTTTTGAAAAAGCTTCTGGCAAGAAAATACCTATCAAGCTAT 1117
Query 664 GTCCGAGAAG-GTCAGGAGATGCAACAGGAGTTTATGCTTCAACAGAGAAGGCTGAGAAA 722
|||| ||||| | | ||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 1118 GTCCAAGAAGAG-CTGGAGATGCAACAGCTGTTTATGCTTCAACTCAGAAAGCTGAGAAG 1176
Query 723 GAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAATTGG 782
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1177 GAACTTGGCTGGAAGGCAAAATATGGAGTTGATGAGATGTGCAGAGATCAATGGAACTGG 1236
Query 783 GCAAACAACAATCCATGGGGTTACCAGAAGAAGCTTTGA 821
||||| || ||||||||||||| ||||||||||| ||||
Sbjct 1237 GCAAATAAGAATCCATGGGGTTTCCAGAAGAAGCCTTGA 1275
> AT1G13195.1 | Symbols: | RING/U-box superfamily protein | chr1:4501581-4503591
REVERSE LENGTH=1224
Length=1224
Score = 150 bits (81), Expect = 2e-35
Identities = 108/119 (91%), Gaps = 9/119 (8%)
Strand=Plus/Plus
Query 9 agagagagagaTATGTATAATCAGTTGGCGATatcttcttcttcatcatcatcttcttct 68
|||||||||||||||||||||||||||||||||||||| ||||| | ||| |||
Sbjct 233 AGAGAGAGAGATATGTATAATCAGTTGGCGATATCTTCGTCTTC-T--TCA------TCT 283
Query 69 tcttcGTACTATGAATCTTTGAAGATTTTGGAAGCTGATGTTCAACACGCTAATTCTTT 127
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 284 TCTTCGTACTATGAATCTTTGAAGGTTTTGGAAGCTGATGTTCAACACGCTAATTCTTT 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5