BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920123
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10510.1 | Symbols: emb2004 | RNI-like superfamily protein |... 449 1e-125
AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galac... 69.4 4e-11
> AT1G10510.1 | Symbols: emb2004 | RNI-like superfamily protein
| chr1:3461635-3465786 FORWARD LENGTH=2150
Length=2150
Score = 449 bits (243), Expect = 1e-125
Identities = 266/277 (96%), Gaps = 1/277 (0%)
Strand=Plus/Plus
Query 302 CAACGTTCCATGGAAATGTAAAGATGCTCAAACTTGGTTGGTGCCAGATAGCTGCTAAGG 361
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 1561 CAA-GTTCCATGGAAATGTAAAGACGCTCAAACTTGGTTGGTGTCAGATAGCTGCCAAGG 1619
Query 362 GTGCTGAACATATTGCAGACATGTTGAGATATAACAACACAATCTCGGTTTTGGACTTGC 421
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1620 GTGCTGAACATGTTGCAGACATGTTGAGATATAACAATACAATCTCGGTTTTGGACTTGC 1679
Query 422 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGAAGCTTGAAAGTAGTTA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGAAGCTTGAAAGTAGTTA 1739
Query 482 ATGAAGCGCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGGGCTTTCG 541
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1740 ATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGAGCATTCG 1799
Query 542 CTATTGCTCAAGCATTAAAGGCCAATGAAGATGTCAC 578
| |||||||||||||| ||||||||||||||||||||
Sbjct 1800 CCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCAC 1836
Score = 220 bits (119), Expect = 1e-56
Identities = 131/137 (96%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 172 GGAGCGGAAAAGATTGCAGATGCTCTGAAGCAAAACCGTTCGATTGCAACCATTGACCTG 231
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1367 GGAGCTGAAAAGATTGCAGATTCTCTGAAGCAAAACCGTTCAATTGCAACCATTGACCTG 1426
Query 232 GGTGGAAATAACATCCATGCGGAGGGAGTCAATGCTATAGCTCAAGCTCTGAAAGATAAT 291
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1427 GGTGGAAATAACATCCACGCGGAGGGAGTTAATGCTATAGCTCAAGCTCTGAAAGATAAT 1486
Query 292 GCAATTATTACAACGTT 308
||||||||||| |||||
Sbjct 1487 GCAATTATTACGACGTT 1503
Score = 139 bits (75), Expect = 3e-32
Identities = 77/78 (99%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 69 GGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGAACTCGTGCTTTGATGGCTGG 128
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1159 GGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGGACTCGTGCTTTGATGGCTGG 1218
Query 129 TCTATCTTCCCACAAAGG 146
||||||||||||||||||
Sbjct 1219 TCTATCTTCCCACAAAGG 1236
> AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galactose
4-epimerase 1 | chr1:4355926-4358328 REVERSE LENGTH=1462
Length=1462
Score = 69.4 bits (37), Expect = 4e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 580 GTAAGAGACCAGTTCGATACATGTGGAATATAAAGCACAA 619
|||||||| |||||||||||||||||||||||||||||||
Sbjct 1385 GTAAGAGATCAGTTCGATACATGTGGAATATAAAGCACAA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5