BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920124

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02210.1 | Symbols:  | GCK domain-containing protein | chr5:...  71.3    1e-11


> AT5G02210.1 | Symbols:  | GCK domain-containing protein | chr5:439253-439874 
REVERSE LENGTH=486
Length=486

 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 50/55 (91%), Gaps = 3/55 (5%)
 Strand=Plus/Plus

Query  113  ATTCATGATAGGAGGTGGTTGCAAAGAATCATTTACGGCTT--A-TGAAGATTGC  164
            |||||||| ||||||||||||||||||||||||||||||||  | ||| ||||||
Sbjct  246  ATTCATGAAAGGAGGTGGTTGCAAAGAATCATTTACGGCTTGGAATGATGATTGC  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28934868672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5