BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920141

Length=1012
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13160.1 | Symbols:  | ARM repeat superfamily protein | chr1...   292    3e-78
  AT1G11910.1 | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | ...   159    4e-38


> AT1G13160.1 | Symbols:  | ARM repeat superfamily protein | chr1:4484584-4488577 
FORWARD LENGTH=2654
Length=2654

 Score =  292 bits (158),  Expect = 3e-78
 Identities = 208/231 (90%), Gaps = 8/231 (3%)
 Strand=Plus/Plus

Query  352  CAGAAAGTTACGAAACGGAGCTCCAATTGATTTACAAACCA-TTTAAAACCTCCGTCGAT  410
            ||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||
Sbjct  154  CAGAAGGTTACGAAACAGAGCTCCAATTGATTTACAAA-CAGTTCAAAACCTCCGTCGAT  212

Query  411  CTCTTTCA-GCAAC-AGGCGGCTCTCACTTTCTCCTCCGTTGGTGGCATTGGCT-TAGAC  467
            ||||| || | ||| | || ||||||| ||||||||||  |||||||||||||| | |||
Sbjct  213  CTCTTCCATG-AACTA-GCAGCTCTCAGTTTCTCCTCCACTGGTGGCATTGGCTCT-GAC  269

Query  468  CCTTCTGTTTCCAAAGACCTCGTTGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTT  527
            ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct  270  CCTTCTGTTTCGAAAGACCTCGGCGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTT  329

Query  528  TACCCGAAGCAACTCGCGGCGTTTCCATCTCAATTGACTGATTTACTTCGT  578
            ||||||||||||||||||||||||||| ||||||| |||| |||||| |||
Sbjct  330  TACCCGAAGCAACTCGCGGCGTTTCCAGCTCAATTAACTGGTTTACTCCGT  380


> AT1G11910.1 | Symbols: APA1, ATAPA1 | aspartic proteinase A1 
| chr1:4016784-4020983 REVERSE LENGTH=1970
Length=1970

 Score =  159 bits (86),  Expect = 4e-38
 Identities = 105/114 (92%), Gaps = 2/114 (2%)
 Strand=Plus/Plus

Query  579  GGA-TTTATCGAGGCAACCAAGGAGTCTGGTATAACtttttttGTAGCTAACTTTGAT-G  636
            ||| ||||||||||||||||||||| |||||||||| ||| |||||||||| |||||| |
Sbjct  618  GGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAATTTGATGG  677

Query  637  TATCTTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAGGCCGCTCCTGTTTG  690
            |||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  678  TATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAGCTGCTCCTGTTTG  731



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49581103089


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5