BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920143
Length=2347
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 3542 0.0
> AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:4361551-4365331 REVERSE LENGTH=2673
Length=2673
Score = 3542 bits (1918), Expect = 0.0
Identities = 2214/2352 (94%), Gaps = 39/2352 (2%)
Strand=Plus/Plus
Query 1 TCTTTGGGCTTAATCGGAAAATGGACGTGCTTGCCTTATCCTCTTCCGCTT------CCG 54
||||| |||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 123 TCTTTCGGCTTAATCGGAAAATGGACGTTCTCGCCTTATCCTCTTCCGCTTCCGCCGCCG 182
Query 55 ------CCGCTTCTCTAGCCGGAAACTTCCCGTTGTTTTCTTCTAGGGTTAAAGTGAGAA 108
|||||||||| |||||||| |||| || |||| |||||||||||| ||||||||
Sbjct 183 CACCCTCCGCTTCTCTCGCCGGAAAATTCCTGTCGTTTCCTTCTAGGGTTAGAGTGAGAA 242
Query 109 GAAACCGGGAGAATTTATTAGCTAAACAGAAGAAGTTTTTAGTTTCAGCTTCGAAAAGAG 168
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 243 GAAACCGAGAGAATTTGTTAGCTAAACAGAAGAAGTTTTTAGTTTCTGCTTCGAAAAGAG 302
Query 169 AAGAGCCTAAGCTCAATGAATGGGATCAAATGGAGCTCAACTTTGGCCGTTTACTAGGCG 228
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 303 AAGAGCCTAAGCTCAACGAATGGGATCAAATGGAGCTCAACTTTGGCCGTTTACTCGGCG 362
Query 229 AAGACCCGAAATTGACTTTGGCTAAGATAGTGGCTAGAAAAGTGAATCCAGAAGCTTCTT 288
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 363 AAGACCCGAAATTGACTTTGGCTAAGATAGTAGCTAGAAAAGTGGATCCAGAAGCTTCTT 422
Query 289 TTATTGAAATTGAGAAATCTTTCTACAAGAACAAAGGTAAAATTCCTGAAGTTGAAGAGA 348
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTATTGACATTGAGAAATCTTTCTACAAGAACAAAGGTAAAATTCCTGAAGTTGAAGAGA 482
Query 349 TTCCATTGGATTGGTCAAACGATAAGAAGAAGAAATCTACTAGTTCACTGGATGGGTTGA 408
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 483 TTCCATTGGATTGGTCAAAGGATAACAAGAAGAAATCTACTAGTTCACTGGATGGATTGA 542
Query 409 AATTGGTAAAGCCTGTTCCGAAAGACGGAGTCAAGTTCGAAAAGCCAGTGATGAAGAAGC 468
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 543 AATTGGTAAAGCCTGTTCTGAAAGATGGAGTCAAGTTCGAAAGGCCAGTGATGAAGAAGC 602
Query 469 CAAGCCCTGTTTTGAAGAAGCCATTGGTGGAGGC---TGCTGCTCCAAAGGTGCAGAGAT 525
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 603 CAAGCCCTGTTTTGAAGAAGCCATTGGTGGAGGCTGTTGCTGCTCCAAAGGTGCAGAGAT 662
Query 526 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTATACTAGTAATAATGATGATGAGG 585
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTATACTAGTAATGGTGATGATGAGG 722
Query 586 AGTCTAAGTTGCGGTTGAAACCGAATTTGACACTGAAAATGAGGAATGAGAGAGAAAATG 645
|||||||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||
Sbjct 723 AGTCTAAGTTGCGGTTGAAACCGAATCTGACATTGAAAATGAGAAATGAGAGGGAAAATG 782
Query 646 AGAGGTTTAGTGATATGACATTGTTGAGAAAACCGGAACCAGTGAGCGTAGATGCAAAAG 705
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 783 AGAGGTTTAGTGATATGACATTGTTGAGAAAACCGGAACCAGTGAGCGTAGTTGCAGAAG 842
Query 706 AGGAAAGTTCTGAAGATAAGGTTATCCCTGATGGGTTAACTATGGAGGAAGGAGGACAAG 765
||| ||| | ||| || | |||||| ||||||||||||||||||| ||| |
Sbjct 843 AGG-AAG-AC--AAG--CCTCTT-T--CTGATGATTTAACTATGGAGGAAGGAGAACAGG 893
Query 766 AAGATGTAACATATTCAGAGTATACTCTTTTGGAGAAGCCAGAAGCAAGGTCT-AAGCCT 824
||| || |||||||||| |||||||||||||||||||||||||||| ||| || |||||
Sbjct 894 AAGGTGGAACATATTCACAGTATACTCTTTTGGAGAAGCCAGAAGCGAGG-CTCCAGCCT 952
Query 825 GAGAACATAAAAGAGGAAGTTGGAGATAGCGGAGCAGTGGAATCATCAGAGATAGAAAAC 884
| || || |||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 953 GTCAATGTAGAAGAGGAAGTTGGAGATAGCGGAGGAGTGGAATCATCTGAGATAGTAAAC 1012
Query 885 AACTCAATTCAGAAGCCAGAAGCAAGGCCAGAGCCTGAGAACGTAGAAAA-GAATGTTGG 943
|||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||
Sbjct 1013 AACTCAATTCAGAAGCCAGAAGCAAGGCCAGAGCTTGAGAACATAGAAAAGGAA-GTTGC 1071
Query 944 AGATAGCGGAGCTATGGAATCATCTGAGATAGAAAATAACTCAATTCCAACTGAAATGCA 1003
||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1072 AGATAGCGGAGTTTTGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGCA 1131
Query 1004 GCTTAACT-GCAAGATGTCCTCGGGATCCTCCGAGGAGAGAACCATTAACAGTGATCCAC 1062
||| || | || |||||| | | | || ||||||| ||| ||||||||||||||||
Sbjct 1132 GCTCAA-TAGCGAGATGT-C-C----T-CT--GAGGAGAAAACTATTAACAGTGATCCAC 1181
Query 1063 TCGAGAGAATTCCTTCGAAACCAATTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGGA 1122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1182 TCGAGAGAATTCCTTCGAAACCAATTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGGA 1241
Query 1123 AACCACAAAGATTAGACCCGTCTTCCGCGGAGCCATCAGTTTCAAACAGAGGACAACCGT 1182
|||||||||||||||||||||||||||| |||||||||||| | |||| |||| ||||||
Sbjct 1242 AACCACAAAGATTAGACCCGTCTTCCGCTGAGCCATCAGTTCCGAACATAGGAAAACCGT 1301
Query 1183 TAATCGTGAACCATGAAGGTCGTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGAT 1242
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CAGTCGTGAACCATGAAGGCCGTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGAT 1361
Query 1243 CGTCCTTGGAGGAAAATGATTGGAATGAGGCAGAGTCTCTAGTTAAAACAGAATTACGAG 1302
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1362 CGTCCTTGGAGGAAAATGATTGGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAG 1421
Query 1303 CAGATGTTGAGCTAATAAGTTCAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 CAGATGTTGAGCTAATAAGTTCAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGA 1481
Query 1363 TCGGATTTTTACCCTACCGGAACCTAGCAGCAAAATGGAAATTTCTCGCATTTGAATCAT 1422
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1482 TTGGATTTTTACCCTACCGGAACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCAT 1541
Query 1423 GGTTAAGAAGAAAAGGTGTAGATCCATCACTGTATCGACAAAACCTTGGGGTAATCGGAG 1482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1542 GGTTAAGAAGAAAAGGTGTAGATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGAG 1601
Query 1483 GTCAAGATGTCACAAGTAAAGCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTA 1542
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1602 GTCAAGATGTCACGAGTAAATCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTA 1661
Query 1543 CATCGATCAACGGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATG 1602
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 CAACGATCAACGGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATG 1721
Query 1603 ACAGAGAAAAGCAGAAGTTCCTGTCATCTTTTGTTGGCCAGAAAATCAAAGTGAATGTTG 1662
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1722 ACAGAGAGAAGCAGAAGTTCCTGTCATCTTTTGTTGGTCAGAAAATCAAAGTGAATGTTG 1781
Query 1663 TTATGGCTAATCGAAACTCAAGGAAGCTTATATTTTCGATGAGGCCGAGAGAAAATGAAG 1722
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1782 TTATGGCAAATCGAAATTCAAGGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAAG 1841
Query 1723 AGGAAGTTGAGAAAAAACGAAATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAAT 1782
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGGAAGTTGAGAAAAAACGAACTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAAT 1901
Query 1783 GCTGCATCAAGAAAATTACCTATTTTGGTATTTTTTGTGAGCTAGAAGGTGTCCCTGCAT 1842
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1902 GCTGCATCAAGAAAATTACCTATTTTGGTATTTTCTGTGAGCTAGAAGGTGTCCCTGCAT 1961
Query 1843 TGGTTCACCAGTCAGAAGTTTCATGGGATGCAACTTTAGACCCTGCTTCATATTTCAAGA 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 TGGTTCACCAGTCAGAAGTTTCATGGGATGCAACTTTAGACCCTGCTTCATATTTCAAGA 2021
Query 1903 TTGGTCAGATTGTGGAAGCGAAAGTGCACCAGCTAGATTTTGCTCTTGAACGTATCTTCT 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 TTGGTCAGATTGTGGAAGCGAAAGTGCACCAGCTAGATTTTGCTCTTGAACGTATCTTCT 2081
Query 1963 TGTCGCTAAAAGAAATCACGCCTGATCCTCTAACCGAAGCCTTAGAATCTGTAGTTGGTG 2022
|||| |||||||||| |||||||||||||| || ||||| |||||||||||||||||||
Sbjct 2082 TGTCATTAAAAGAAATTACGCCTGATCCTCTTACTGAAGCTTTAGAATCTGTAGTTGGTG 2141
Query 2023 GTGATAATGATCAGTTGGGGGGACGATTACAAGCAGCAGAGCTCGACGCTGAGTGGCCTG 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 GTGATAATGATCAGTTGGGGGGACGATTACAAGCAGCAGAGCTCGACGCTGAGTGGCCTG 2201
Query 2083 ACGTGGAATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATTCAATCAGTTTCAAAAA 2142
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2202 ACGTGGAATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATCCAATCAGTCTCAAAAA 2261
Query 2143 GTCGTTTCTTCTTGAGCCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATGT 2202
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 GTCGTTTCTTCTTGAGTCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATGT 2321
Query 2203 TTGAGAACCAATACAAACTGCTTGCTCGAGCTGGAAACAGAGTACAAGAGCTTATTGTTG 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 TTGAGAACCAATACAAACTGCTTGCTCGAGCTGGAAACAGAGTACAAGAGCTTATTGTTG 2381
Query 2263 AAGCATCGTTGAGCAAAGAAGAGATGAAATCTACAATCATGTCTTGCACCAACAGAGTAG 2322
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 AAGCATCCTTGAGCAAAGAAGAGATGAAATCTACAATCATGTCTTGCACCAACAGAGTAG 2441
Query 2323 AATGAGAATATT 2334
||||||||||||
Sbjct 2442 AATGAGAATATT 2453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116515464945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5