BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920156
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12910.1 | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-li... 1884 0.0
AT3G26640.1 | Symbols: LWD2 | Transducin/WD40 repeat-like super... 1146 0.0
> AT1G12910.1 | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-like
superfamily protein | chr1:4394897-4396291 REVERSE LENGTH=1395
Length=1395
Score = 1884 bits (1020), Expect = 0.0
Identities = 1076/1104 (97%), Gaps = 0/1104 (0%)
Strand=Plus/Plus
Query 1 GGAGGCGATTTTCTAGGGTTTTTGCTCGGATTCGATTTCACGATGGGAACGAGCAGCGAT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 96 GGAGGCGATTTTCTAGGGTTTTTGCTCGGAATCGATTTCACGATGGGAACGAGCAGCGAT 155
Query 61 CCGATTCAAGATGGTTCCGATGAGCAGCAGAAACGTTCAGAGATCTACACATACGAAGCT 120
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 156 CCGATTCAAGATGGTTCCGATGAGCAGCAGAAGCGATCAGAGATCTATACATACGAAGCG 215
Query 121 CCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTACCGTCTCGCC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 216 CCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCGATAAGAAGTATCGTCTCGCC 275
Query 181 ATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGATTGTGCAGCTCGATGAATCC 335
Query 241 AATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTACCCACCAACGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 336 AATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGCATCCTTATCCACCAACGAAG 395
Query 301 ACCATTTTCATCCCTGATAAAGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGAT 360
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 396 ACCATTTTCATACCTGACAAGGAATGCCAAAGACCTGATCTTCTCGCTACTTCAAGTGAT 455
Query 361 TTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGTGTTGAGCTCAAATCTTGTCTC 515
Query 421 AATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAACGAAGCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 AATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACTTCTTTTGATTGGAATGAAGCT 575
Query 481 GAGCCACGCCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAG 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GAGCCACGTCGAATTGGAACATCTAGTACTGATACGACTTGTACTATCTGGGACATTGAG 635
Query 541 CGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAAGGAAGTTTTTGATATTGCTTGG 695
Query 601 GGTGGTGTTGGTGTTTTTGCCTCTGTTTCAGCTGATGGTTCCGTTAGGGTGTTTGATCTT 660
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 696 GGTGGTGTTGGTGTTTTTGCATCTGTTTCAGCTGATGGCTCCGTTAGGGTGTTTGATCTT 755
Query 661 CGTGATAAAGAACATTCGACGATTATCTATGAGAGCTCTGAGCCTGATACTCCTTTGGTG 720
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 756 CGTGATAAGGAACATTCGACGATTATCTATGAGAGCTCCGAGCCTGATACTCCTTTAGTG 815
Query 721 CGTCTTGGTTGGAACAAGCAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CGTCTTGGTTGGAACAAACAGGATCCTAGGTACATGGCTACTATTATCATGGACAGTGCT 875
Query 781 AAAGTTGTGGTGCTCGACATTCGTTTTCCGGCTCTTCCTGTTGTGGAGCTTCAACGACAT 840
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 876 AAAGTTGTGGTGCTTGACATTCGTTTTCCGGCTCTTCCTGTGGTTGAGCTTCAACGACAT 935
Query 841 CAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCATAGCTCTTGTCACATTTGTACTGCT 995
Query 901 GGAGATGATTCTCAAGCCTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGT 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GGAGATGATTCTCAAGCTTTGATTTGGGATATTTCATCCATGGGACAGCATGTTGAAGGT 1055
Query 961 GGTCTTGACCCTATTCTCGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAATGGTCC 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1056 GGTCTTGACCCTATTCTAGCTTACACTGCTGGTGCTGAGATTGAGCAGCTTCAGTGGTCC 1115
Query 1021 TCTTCTCAGCCTGATTGGGTCGCCATTGCTTTCTCCACCAAGCTGCAAATTCTCAGGGTT 1080
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1116 TCTTCTCAGCCTGATTGGGTCGCAATTGCTTTCTCTACTAAGCTGCAAATTCTCAGGGTT 1175
Query 1081 TGATCTTTTAAAAGAATTTCTCAT 1104
||||||||| ||||||||||||||
Sbjct 1176 TGATCTTTTCAAAGAATTTCTCAT 1199
> AT3G26640.1 | Symbols: LWD2 | Transducin/WD40 repeat-like superfamily
protein | chr3:9793220-9794457 FORWARD LENGTH=1238
Length=1238
Score = 1146 bits (620), Expect = 0.0
Identities = 908/1049 (87%), Gaps = 12/1049 (1%)
Strand=Plus/Plus
Query 42 GATGGGAACGAGCAGCGATCCGATTCAAGATGGTTCCGATGAGC-AGCAGAAACGTTCAG 100
||||| ||||||||||||| || ||| ||||||| || |||| | || ||| | ||||
Sbjct 56 GATGGTTACGAGCAGCGATCAAATCCAAAATGGTTCTGAAGAGCAATCA-AAAAGATCAG 114
Query 101 AGATCTACACATACGAAGCTCCATGGCACATCTACGCAATGAATTGGAGCGTTCGTCGCG 160
|||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||| |
Sbjct 115 AGATTTACACATACGAAGCACCATGGCAGATCTACGCAATGAACTGGAGCATTCGTCGAG 174
Query 161 ATAAGAAGTACCGTCTCGCCATCACTAGCCTCCTCGAGCAATACCCGAACCGTGTCGAGA 220
| |||||||| || ||||| ||||| |||||| |||||||||| ||||| || ||||| |
Sbjct 175 ACAAGAAGTATCGGCTCGCAATCACAAGCCTCATCGAGCAATATCCGAATCGCGTCGAAA 234
Query 221 TTGTGCAGCTCGATGAATCCAATGGTGAGATCCGTTCCGATCCTAACCTCTCCTTTGAGC 280
|||| ||||| |||||||| ||||||||||| ||||| ||||| || |||| ||| || |
Sbjct 235 TTGTTCAGCTTGATGAATCAAATGGTGAGATTCGTTCAGATCCAAATCTCTGCTTCGAAC 294
Query 281 ATCCTTACCCACCAACGAAGACCATTTTCAT-CCCTGATAAAGAATGCCAAAGACCTGAT 339
||||||||||||||||||| |||| |||||| ||| ||||||||||| |||||||| |||
Sbjct 295 ATCCTTACCCACCAACGAAAACCAGTTTCATACCC-GATAAAGAATGTCAAAGACCCGAT 353
Query 340 CTTCTCGCTACTTCAAGTGATTTCCTTCGTTTATGGAGAATCGCTGATGATCATTCCCGT 399
||| | |||||||| ||||||||||||||||||||| ||||| |||||||| | || |||
Sbjct 354 CTTTTAGCTACTTCTAGTGATTTCCTTCGTTTATGGCGAATCTCTGATGATGAATCTCGT 413
Query 400 GTTGAGCTCAAATCTTGTCTCAATAGCAATAAGAACAGTGAGTTTTGTGGTCCTCTTACT 459
|||||||| || |||||||| | ||| ||||||| ||||||||| ||||||| | |||
Sbjct 414 GTTGAGCTTAAGTCTTGTCTTAGTAGTGATAAGAATAGTGAGTTTAGTGGTCCAATCACT 473
Query 460 TCTTTTGATTGGAACGAAGCTGAGCC-ACGCCGAATTGGAACATCTAGTACTGATACGAC 518
|| ||||||||||| ||||||||||| | | |||||||| || ||||||| |||||| ||
Sbjct 474 TCATTTGATTGGAATGAAGCTGAGCCTA-GACGAATTGGTACTTCTAGTATTGATACCAC 532
Query 519 TTGTACTATCTGGGACATTGAGCGTGAAGCTGTTGATACTCAGCTTATTGCTCATGATAA 578
||||||||| ||||| || |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 533 TTGTACTATTTGGGATATAGAGCGTGAAGTTGTTGATACCCAGCTTATTGCTCATGATAA 592
Query 579 GGAAGTTTTTGATATTGCTTGGGGTGGTGTTGGTGTTTTTGCCTCTGTTTCAGCTGATGG 638
|| |||| ||| ||||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 593 AGAGGTTTATGACATTGCTTGGGGTGGTGTTGGTGTCTTTGCCTCTGTCTCAGAGGATGG 652
Query 639 TTCCGTTAGGGTGTTTGATCTTCGTGATAAAGAACATTCGACGATTATCTATGAGAGCT- 697
||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||| |
Sbjct 653 TTCCGTTAGAGTGTTTGATCTCCGTGATAAGGAGCATTCGACGATTATCTACGAGAG-TG 711
Query 698 CTGAGCCTGA-TACTCCTTTGGTGCGTCTTGGTTGGAACAAGCAGGATCCTAGGTACATG 756
||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||| |||
Sbjct 712 GTGAGCCT-AGTACTCCTTTGGTGCGACTTAGTTGGAACAAGCAGGATCCGAGGTATATG 770
Query 757 GCTACTATTATCATGGACAGTGCTAAAGTTGTGGTGCTCGACATTCGTTTTCCGGCTCTT 816
|||||| ||||||||| |||||||||| |||| ||| | || ||||| ||||||||||||
Sbjct 771 GCTACTGTTATCATGGGCAGTGCTAAAATTGTTGTGTTGGATATTCGGTTTCCGGCTCTT 830
Query 817 CCTGTTGTGGAGCTTCAACGACATCAAGCTAGTGTCAATGCCATTGCTTGGGCTCCTCAT 876
||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct 831 CCTGTCGTGGAGCTTCAGCGACATCAGGCTAGTGTCAATGCTATAGCTTGGGCTCCTCAT 890
Query 877 AGCTCTTGTCACATTTG-TACTGCTGGAGATGATTCTCAAGCCTTGATTTGGGATATTTC 935
||||||| || || || | | ||||||||||||||||| || |||||||||||||| ||
Sbjct 891 AGCTCTTCCCATATCTGCT-CCGCTGGAGATGATTCTCAGGCGTTGATTTGGGATATATC 949
Query 936 ATCCATGGGACAGCATGTTGAAGGTGGTCTTGACCCTATTCTCGCTTACACTGCTGGTGC 995
||||||||||||||||||||||||||||| || || ||||| |||||||| || || ||
Sbjct 950 TTCCATGGGACAGCATGTTGAAGGTGGTCTGGATCCGATTCTAGCTTACACAGCCGGCGC 1009
Query 996 TGAGATTGAGCAGCTTCAATGGTCCTCTTCTCAGCCTGATTGGGTCGCCATTGCTTTCTC 1055
|||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1010 TGAGGTTGAGCAGCTTCAGTGGTCATCTTCTCAGCCTGATTGGGTTGCCATTGCCTTCTC 1069
Query 1056 CACCAAGCTGCAAATTCTCAGGGTTTGAT 1084
| ||||||||| |||||| |||| ||||
Sbjct 1070 TAACAAGCTGCAGATTCTCCGGGTCTGAT 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5