BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920163 Length=1020 Score E Sequences producing significant alignments: (Bits) Value AT1G12980.1 | Symbols: ESR1, DRN | Integrase-type DNA-binding s... 1234 0.0 > AT1G12980.1 | Symbols: ESR1, DRN | Integrase-type DNA-binding superfamily protein | chr1:4429718-4430965 FORWARD LENGTH=1248 Length=1248 Score = 1234 bits (668), Expect = 0.0 Identities = 917/1035 (89%), Gaps = 26/1035 (3%) Strand=Plus/Plus Query 3 AAACCCTAGAAACCAAAAAATGGAAGAAGCCCTAAGGAACTTCACCGAATCTAGCCACTC 62 |||||||||||||| |||||||||| ||||| | || |||||||||||||||| |||||| Sbjct 56 AAACCCTAGAAACC-AAAAATGGAAAAAGCCTTGAGAAACTTCACCGAATCTACCCACTC 114 Query 63 ACCCGACCCAAATCCTTTCACGAAAA-ACTTCACTGATGCTACAGCTTCACCAGTTAGCC 121 ||| ||||| |||||| |||| |||| ||||||||| ||||||| ||||| ||||||| Sbjct 115 ACCAGACCCTAATCCTCTCAC-AAAATTCTTCACTGAACCTACAGCCTCACCTGTTAGCC 173 Query 122 GCAACCGCAAACCGTCTTCAAAAGATACCACAGTAACCATCGCCGGAGTTGGCAGCAGCA 181 |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 174 GCAACCGCAAACTGTCTTCAAAAGATACCACTGTAACCATCGCCGGAGCTGGCAGCAGCA 233 Query 182 CGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATATGCGGCTGAGATACGTG 241 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 234 CGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATACGCGGCGGAGATACGTG 293 Query 242 ACCCAATGTCAAAGGAAAGACAGT-GGCTCGGAACATTCGACACGGCGGAGCAAGCCGCT 300 |||||||||| ||||| |||| || ||||||||||||| ||||||||||| ||||||||| Sbjct 294 ACCCAATGTCGAAGGAGAGAC-GTTGGCTCGGAACATTTGACACGGCGGAACAAGCCGCT 352 Query 301 TGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCTAAGGCTCGTACCAATTTTGCT 360 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 353 TGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCAAAGGCTCGTACTAATTTTACT 412 Query 361 TATCCGACAGCTGTTATTATGCCTGAGCCAAGGTTTTCCTTTTCTACCAAGAAATCT-CT 419 |||||||||||||| ||||||||||| ||||||||||| ||||| | |||||||||| | Sbjct 413 TATCCGACAGCTGTCATTATGCCTGAACCAAGGTTTTCTTTTTCCAACAAGAAATCTTC- 471 Query 420 GTCGTCCCCCCGTTGTCCTCTTCCTTCTCTACCGTTAGATCTC-TCTACCCAGGACTTTT 478 | |||| | |||||||||||||||||||||||||||||| || |||||||| |||||| Sbjct 472 GCCGTCTGCTCGTTGTCCTCTTCCTTCTCTACCGTTAGAT-TCCTCTACCCAAAACTTTT 530 Query 479 TCGGTGCACCGGCAGCGCAGAGGAT-TA-A-TACACAGTCTATCTTCTTACGTGACGCCT 535 |||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||| Sbjct 531 ACGGTGCACCGGCAGCGCAGAGGATCTATAATACACAGTCTATCTTCTTACGCGACGCCT 590 Query 536 CGTGTTCCTCTCGTAAAACGACTCCGTATAA---CTCTTTCAACGTTTCATCTTCTTCTT 592 ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 591 CGTGTTCCTCTCGTAAAACGACTCCGTATAATAACTCTTTCAACGGCTCATCATCTTCTT 650 Query 593 ACTCAGCACCGAAGACGGCATGCTTTTCATCTTCCGACAACGAAAACAACGAGTCGTTTT 652 |||||||| |||| ||||||||| |||| | |||||| |||||||||||||||||||||| Sbjct 651 ACTCAGCATCGAAAACGGCATGCGTTTCTTATTCCGAAAACGAAAACAACGAGTCGTTTT 710 Query 653 TCCCTGAAGAATCTTCTGATTCTGGTCTTTTACAAGAGGTCGTTCAAGAGTTCTTGAAGA 712 |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 711 TCCCGGAAGAATCTTCTGATACTGGTCTATTACAAGAGGTCGTTCAAGAGTTCTTGAAGA 770 Query 713 AGAATCGCGGCACTCCTCCG-C-C-ACCAACACCACCGCCGGTGACCAGCCAT-ACTCAT 768 | ||||||||| |||||| | | ||||||||||||||||||||| |||||| | | | Sbjct 771 AAAATCGCGGCGTTCCTCCTTCTCCACCAACACCACCGCCGGTGACTAGCCATCA-TGAC 829 Query 769 AACTCTGGTGATTTCTCTGCTCTCACTCTCTACTCTGACAATATGTTTCAAGACACGAAG 828 ||||||||| |||||||| ||||||| | |||||||| |||||| ||||||| || ||| Sbjct 830 AACTCTGGTTATTTCTCTAATCTCACTATATACTCTGAAAATATGGTTCAAGAGACTAAG 889 Query 829 GAGTCCCTATCGTCGAAACTAGATCGCTTCGGGAATTTCCAAGCTAATGACTCCGGT-TA 887 ||| | | ||||||||||||||||||| ||||||||| |||||||||||| ||| || Sbjct 890 GAGACTTTGTCGTCGAAACTAGATCGCTACGGGAATTTTCAAGCTAATGACGACGGCGTA 949 Query 888 TTTCGACGGCGTA-AGCGCCGCCGCAGACGGTGGT-TCAAACGAGTGGGGGTATCAAGAA 945 | || || | | || | | || ||| |||||||||||||||||||||||| Sbjct 950 AGA-GCCGTCGCAGA-CGGTGGTTTAT-CGTTGGGATCAAACGAGTGGGGGTATCAAGAA 1006 Query 946 ATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGGAGATCGTGGGGATAGCTAGAT 1005 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1007 ATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGAAGATCGTGGGGATAGCTAGAT 1066 Query 1006 CTTCATCATGATTAT 1020 |||||||||||||| Sbjct 1067 ATTCATCATGATTAT 1081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49982976265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5