BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920163
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12980.1 | Symbols: ESR1, DRN | Integrase-type DNA-binding s... 1234 0.0
> AT1G12980.1 | Symbols: ESR1, DRN | Integrase-type DNA-binding
superfamily protein | chr1:4429718-4430965 FORWARD LENGTH=1248
Length=1248
Score = 1234 bits (668), Expect = 0.0
Identities = 917/1035 (89%), Gaps = 26/1035 (3%)
Strand=Plus/Plus
Query 3 AAACCCTAGAAACCAAAAAATGGAAGAAGCCCTAAGGAACTTCACCGAATCTAGCCACTC 62
|||||||||||||| |||||||||| ||||| | || |||||||||||||||| ||||||
Sbjct 56 AAACCCTAGAAACC-AAAAATGGAAAAAGCCTTGAGAAACTTCACCGAATCTACCCACTC 114
Query 63 ACCCGACCCAAATCCTTTCACGAAAA-ACTTCACTGATGCTACAGCTTCACCAGTTAGCC 121
||| ||||| |||||| |||| |||| ||||||||| ||||||| ||||| |||||||
Sbjct 115 ACCAGACCCTAATCCTCTCAC-AAAATTCTTCACTGAACCTACAGCCTCACCTGTTAGCC 173
Query 122 GCAACCGCAAACCGTCTTCAAAAGATACCACAGTAACCATCGCCGGAGTTGGCAGCAGCA 181
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 174 GCAACCGCAAACTGTCTTCAAAAGATACCACTGTAACCATCGCCGGAGCTGGCAGCAGCA 233
Query 182 CGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATATGCGGCTGAGATACGTG 241
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 234 CGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATACGCGGCGGAGATACGTG 293
Query 242 ACCCAATGTCAAAGGAAAGACAGT-GGCTCGGAACATTCGACACGGCGGAGCAAGCCGCT 300
|||||||||| ||||| |||| || ||||||||||||| ||||||||||| |||||||||
Sbjct 294 ACCCAATGTCGAAGGAGAGAC-GTTGGCTCGGAACATTTGACACGGCGGAACAAGCCGCT 352
Query 301 TGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCTAAGGCTCGTACCAATTTTGCT 360
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 353 TGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCAAAGGCTCGTACTAATTTTACT 412
Query 361 TATCCGACAGCTGTTATTATGCCTGAGCCAAGGTTTTCCTTTTCTACCAAGAAATCT-CT 419
|||||||||||||| ||||||||||| ||||||||||| ||||| | |||||||||| |
Sbjct 413 TATCCGACAGCTGTCATTATGCCTGAACCAAGGTTTTCTTTTTCCAACAAGAAATCTTC- 471
Query 420 GTCGTCCCCCCGTTGTCCTCTTCCTTCTCTACCGTTAGATCTC-TCTACCCAGGACTTTT 478
| |||| | |||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 472 GCCGTCTGCTCGTTGTCCTCTTCCTTCTCTACCGTTAGAT-TCCTCTACCCAAAACTTTT 530
Query 479 TCGGTGCACCGGCAGCGCAGAGGAT-TA-A-TACACAGTCTATCTTCTTACGTGACGCCT 535
|||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||
Sbjct 531 ACGGTGCACCGGCAGCGCAGAGGATCTATAATACACAGTCTATCTTCTTACGCGACGCCT 590
Query 536 CGTGTTCCTCTCGTAAAACGACTCCGTATAA---CTCTTTCAACGTTTCATCTTCTTCTT 592
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 591 CGTGTTCCTCTCGTAAAACGACTCCGTATAATAACTCTTTCAACGGCTCATCATCTTCTT 650
Query 593 ACTCAGCACCGAAGACGGCATGCTTTTCATCTTCCGACAACGAAAACAACGAGTCGTTTT 652
|||||||| |||| ||||||||| |||| | |||||| ||||||||||||||||||||||
Sbjct 651 ACTCAGCATCGAAAACGGCATGCGTTTCTTATTCCGAAAACGAAAACAACGAGTCGTTTT 710
Query 653 TCCCTGAAGAATCTTCTGATTCTGGTCTTTTACAAGAGGTCGTTCAAGAGTTCTTGAAGA 712
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 711 TCCCGGAAGAATCTTCTGATACTGGTCTATTACAAGAGGTCGTTCAAGAGTTCTTGAAGA 770
Query 713 AGAATCGCGGCACTCCTCCG-C-C-ACCAACACCACCGCCGGTGACCAGCCAT-ACTCAT 768
| ||||||||| |||||| | | ||||||||||||||||||||| |||||| | | |
Sbjct 771 AAAATCGCGGCGTTCCTCCTTCTCCACCAACACCACCGCCGGTGACTAGCCATCA-TGAC 829
Query 769 AACTCTGGTGATTTCTCTGCTCTCACTCTCTACTCTGACAATATGTTTCAAGACACGAAG 828
||||||||| |||||||| ||||||| | |||||||| |||||| ||||||| || |||
Sbjct 830 AACTCTGGTTATTTCTCTAATCTCACTATATACTCTGAAAATATGGTTCAAGAGACTAAG 889
Query 829 GAGTCCCTATCGTCGAAACTAGATCGCTTCGGGAATTTCCAAGCTAATGACTCCGGT-TA 887
||| | | ||||||||||||||||||| ||||||||| |||||||||||| ||| ||
Sbjct 890 GAGACTTTGTCGTCGAAACTAGATCGCTACGGGAATTTTCAAGCTAATGACGACGGCGTA 949
Query 888 TTTCGACGGCGTA-AGCGCCGCCGCAGACGGTGGT-TCAAACGAGTGGGGGTATCAAGAA 945
| || || | | || | | || ||| ||||||||||||||||||||||||
Sbjct 950 AGA-GCCGTCGCAGA-CGGTGGTTTAT-CGTTGGGATCAAACGAGTGGGGGTATCAAGAA 1006
Query 946 ATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGGAGATCGTGGGGATAGCTAGAT 1005
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1007 ATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGAAGATCGTGGGGATAGCTAGAT 1066
Query 1006 CTTCATCATGATTAT 1020
||||||||||||||
Sbjct 1067 ATTCATCATGATTAT 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5