BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920165
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13000.1 | Symbols: | Protein of unknown function (DUF707) ... 2036 0.0
AT3G26440.1 | Symbols: | Protein of unknown function (DUF707) ... 734 0.0
> AT1G13000.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:4436105-4439464 REVERSE LENGTH=1901
Length=1901
Score = 2036 bits (1102), Expect = 0.0
Identities = 1197/1244 (96%), Gaps = 1/1244 (0%)
Strand=Plus/Plus
Query 1 ACTTAAACCGGATTCAGGACATGGCTAACCGAACAGACAACTCGAATCGCTGTTCGAATG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ACTT-AACCGGATTCAGGACATGGCTAACCGAACAGACAACTCGAATCGCTGTTCGAATG 438
Query 61 GTAAAAAGCCAAATGATGGAATGAGACTCATTATAGCGACATTCGTAGGAATAGTTATCG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 439 GTAAAAAGCCAAATGATGGAATGAGACTCATTATAGCGACATTCGTAGGAATAGTTGTCG 498
Query 121 GTTTCTTCTTGGGGATATCTTTCCCTACATTATCACTAACAAAACTAAATTTCCCCTCTG 180
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 499 GTTTCTTCTTGGGGATATCTTTCCCTACACTATCACTAACAAAACTAAATTTTCCCTCTG 558
Query 181 GCATTCTTCCCTCTGTTGATATTGCTTACGTGGAAGATGAGACACCAGAAACATCGAGTG 240
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 559 GCATTCTTCCCTCTGTTGATATTACTTACGTAGAAGATGAGACACCAGAAACATCGAGTG 618
Query 241 AAACGCTTTTACATACATGGTCATCTAGGAGTCCGTTACATAGGGCTAATTCGAGTGATG 300
|||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 619 AAACGCTTTTGCATACATGGTCATCTAGGGGTCCGTTACATGGGGCTAATTCAAGTGATG 678
Query 301 CACCGCAATGGAAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAAATGCTGACTCCTG 360
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 679 CACCGCATTGGAAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAGATGCTGACTCCTG 738
Query 361 GTATCATTGCATCTGAATCAGATTACTACATACGCAGACTTTGGGGATTACCTGAAGAGG 420
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 739 GTATCATTGCACCTGAATCAGATTACTACTTACGCAGACTTTGGGGATTACCTGAGGAGG 798
Query 421 ATGTTCCTGTGAAGCCAAAGTATCTCATTGCTTTTACTGTCGGTTTTGGTCAGAAAGTAA 480
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 799 ATGTTCCTGTGAAGCCAAAGTATCTCATTGCGTTTACTGTCGGTTTTGGTCAGAAAGTGA 858
Query 481 ACGTTGATGCTTGTGTCAAGAAGTTTTCAGAAGATTTCACAATTGTCCTGTTCCACTACG 540
||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||
Sbjct 859 ACGTTGATGCTTGTGTCAAGAAGTTTTCAAAAGATTTTACAATTGTTCTATTCCACTACG 918
Query 541 ATGGACGAACCACAGAATGGGGCGAATTCGAATGGTCCAAACGCGCAATACACGTGAGCG 600
| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 919 ACGGACGAACCACAGAATGGGAAGAATTAGAATGGTCCAAACGCGCAATACACGTGAGCG 978
Query 601 TGCCAAAGCAAACCAAATGGTGGTATGCTAAACGGTTTCTGCATCCTGACATCGTGGCAC 660
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 979 TGCCAAAGCAAACCAAATGGTGGTATGCTAAAAGGTTTCTGCATCCTGACATTGTGGCAC 1038
Query 661 CTTATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CTTATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAG 1098
Query 721 AGTACATCAGGCTGATTAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTGGAGTCTa 780
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1099 AGTACATCAGGCTTATAAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTTGAGTCTA 1158
Query 781 aaaaaaaGATCACGTGGGAGATAACAAAGAGAAAAACCAAAGGAGAAGTTCACAAAGATG 840
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 AGAAAAAGATCACATGGGAGATAACAAAGAGAAAAACCAAAGGAGAAGTTCACAAAGATG 1218
Query 841 CCAAGGAGAAACCAGGTCGATGCAACGACCCTCACTTGCCTCCATGTGCGGCGTTTATAG 900
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1219 CGAAGGAGAAACCAGGTCGATGCAATGACCCTCACTTGCCTCCCTGTGCAGCGTTTATAG 1278
Query 901 AGATTATGGCTCCAGTATTCTCAAGAGATGCGTGGCGTTGTGTGTGGCATATGATTCAGA 960
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1279 AGATTATGGCTCCAGTATTCTCAAGAGATGCATGGCGTTGCGTGTGGCATATGATTCAGA 1338
Query 961 ACGACTTGGTTCACGGTTGGGGTCTTGATTTTGCACTCCGTAAATGCGTCGAGCCTGCAC 1020
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1339 ACGATTTGGTTCACGGTTGGGGTCTTGATTTCGCACTCCGTAAATGCGTTGAGCCTGCAC 1398
Query 1021 ATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATTCATCAATCTCTTCCTTCTTTAG 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1399 ATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAG 1458
Query 1081 GCAGCCAGGGAGAGGCACAAGATGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAGATGTA 1140
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1459 GCAGCCAGGGAGAGGCACAAGACGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAGATGTA 1518
Query 1141 AACGAGAATGGACAATGTTTCAAAGCCGATTGGCGAGTTCCGAGAAGCAGTATCTCAAGG 1200
|||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 1519 AACGGGAATGGACAATGTTCCAAAGCCGAATGGCTAGTTCCGAGAAGCAGTATCTCAAGG 1578
Query 1201 AAATCGCAAACTCAACGATTCATTAGCTGAAGAAACTAAACAAA 1244
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 AAATCGCAAACTCAACGATTCATTAGCTGAAGAAACTAAACAAA 1622
> AT3G26440.1 | Symbols: | Protein of unknown function (DUF707)
| chr3:9676982-9679900 FORWARD LENGTH=1532
Length=1532
Score = 734 bits (397), Expect = 0.0
Identities = 747/914 (82%), Gaps = 31/914 (3%)
Strand=Plus/Plus
Query 312 AAGATTTGGGTTCCATCGAATCCCCGAGGTGCAGAAATGCTGA-CTCCTGGTATCATTGC 370
||||||||||||||||||||||| ||||||||||| ||| | | |||| || | ||||
Sbjct 384 AAGATTTGGGTTCCATCGAATCCTCGAGGTGCAGAGATG-TTACCTCCAAGTTTTGTTGC 442
Query 371 ATCTGAATCAGATTACTACATACGCAGACTT-TGGGGATTACCTGAAGAGGATGTT-CC- 427
| | ||||| |||| ||| |||| ||| || |||||||| ||| |||| ||| || ||
Sbjct 443 AGCCGAATCGGATTTTTACTTACGAAGA-TTGTGGGGATTGCCTAAAGATGAT-TTACCA 500
Query 428 -T-GTGAAGCCAAAGTATCTCATTGCTTTTACTGTCGGTTTTGGTC--AGAAAGTAAACG 483
| |||||||| |||||||| ||||||||||||| || || | ||||| ||||
Sbjct 501 GTGGTGAAGCCTAAGTATCTTGTTGCTTTTACTGTTTCTTATGAACAAAGAAA--AAACA 558
Query 484 TTGATGCTTGTGTCAAGAAGTTTTCAGA-AGATTTCACAATTGTCCTGTTCCACTACGAT 542
| |||||||||||||| || || ||||| | | ||||| ||||| ||||| || ||||||
Sbjct 559 TCGATGCTTGTGTCAAAAAATTCTCAGATA-ACTTCACCATTGTTCTGTTTCATTACGAT 617
Query 543 GGACGAACCACAGAATGGGGCGAATTCGAATGGTCCAAACGCGCAATACACGTGAGCGTG 602
||| |||| | || | | ||||| |||||||| ||||| || |||||||| || ||
Sbjct 618 GGAAAAACCTCGGAGTATGATGAATTTGAATGGTCTAAACGGGCGATACACGTCAGTGTA 677
Query 603 CCAAAGCAAACCAAATGGTGGTATGCTAAACGGTTTCTGCATCCTGACATCGTGGCACCT 662
|| ||||||||||| ||||||||||||||| |||||||||||||||| ||| | |||||
Sbjct 678 CCTAAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATAGCACCA 737
Query 663 TATGACTATGTATTCATCTGGGATGAAGACCTCGGCCTTGAAAACTTCGATGTAGAAGAG 722
||||| ||| ||||||| ||||||||||| || ||| ||||||||||||| | |||||||
Sbjct 738 TATGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGAAGAG 797
Query 723 TACATC-AGGCTGATTAAGAAACACGGTCTAGAGATATCGCAGCCTGCTGTGGAGTCTaa 781
|||||| || || | || || || |||||||| |||||||| || |||||||| || ||
Sbjct 798 TACATCAAGATTG-TGAATAAGCATGGTCTAGAAATATCGCAACCCGCTGTGGAATC-AA 855
Query 782 -aaaa-aaGATCACGTGGGAGATAACAAAGAGAAAAACC-AAAGGAGAAGTTCACAAAGA 838
|||| | ||||| ||| ||||||||||||||| | || || ||||||||||||||
Sbjct 856 GAAAATCA-ATCACATGGAAGATAACAAAGAGAATACCCGGAA-TCGAAGTTCACAAAGA 913
Query 839 TG-CCAAGGAGAAACCAGGTCGATGCAACGACCCTCACTTGCCTCCATGTGC-GGCGTTT 896
| | || ||||||||||| || ||||| ||||||||| | ||||| ||||| || ||||
Sbjct 914 AGTCGAA-GAGAAACCAGGCCGCTGCAATGACCCTCACCTACCTCCTTGTGCAGG-GTTT 971
Query 897 ATAGAGATTATGGCTCCAGTATTCTCAAGAGATGCGTGGCGTTGTGTGTGGCATATGATT 956
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 972 ATAGAGATTATGGCTCCAGTTTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATGATT 1031
Query 957 CAGAACGACTTGGTTCACGGTTGGGGTCTTGATTTTGCACTCCGTAAATGCGTCGAGCCT 1016
||||| |||||||||||||||||||||||||| ||||| || | |||||||||||||||
Sbjct 1032 CAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGAGCCT 1091
Query 1017 GCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATTCATCAATCTCTTCCTTCT 1076
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1092 GCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCT 1151
Query 1077 TTAGGCAGCCAGGGAGAG-GCACAAGATGGTAAAGCAGGGTGGCAAGGGGTGAGAGACAG 1135
||||||||||||||| | || || || || ||| | | || |||||||| ||||| ||
Sbjct 1152 TTAGGCAGCCAGGGA-ACCGCGCAGGAAGGGAAAACCGCGTTCCAAGGGGTAAGAGAGAG 1210
Query 1136 ATGTAAACGAGAATGGACAATGTTTCA-AAGCCGATTGGCGAGTTCCGAGAAGCAGTATC 1194
||||||||| ||||||||||||||||| || || || | | || ||| || ||||||
Sbjct 1211 ATGTAAACGGGAATGGACAATGTTTCAGAAAA-GAATGACCCGATCAGAGCAGAAGTATC 1269
Query 1195 TCAAGGAAATCGCA 1208
| || ||||| |||
Sbjct 1270 TGAAAGAAATTGCA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5