BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920166
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor 4B... 2625 0.0
AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiati... 588 6e-167
> AT1G13020.1 | Symbols: EIF4B2 | eukaryotic initiation factor
4B2 | chr1:4440544-4443684 REVERSE LENGTH=2197
Length=2197
Score = 2625 bits (1421), Expect = 0.0
Identities = 1617/1709 (95%), Gaps = 24/1709 (1%)
Strand=Plus/Plus
Query 1 TTTGGAATT-GAAAAATCACAGATGCCGAAACCTTGGGGTGGAATCGGCGCATGGGCCGA 59
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 143 TTTGGAATTGGAAAATTCACAGATGTCGAAACCTTGGGGTGGAATCGGCGCATGGGCTGA 202
Query 60 TGAGGCTGAGCGTGCCGATGAAGAGCAAGCTGCTGAAGCTACAGCCACGGCGGCGGATTC 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 203 TGAGGCTGAGCGTGCCGATGAAGAGCAAGCTGCTGAAGCTACAGCCACGGCGGCAGATTC 262
Query 120 ACAGAGTTTCCCGAGTTTGAAAGAGGCTGCGACTGCTAAGTCTTCTAAGAAGAAGAAGAA 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ACAGAGTTTCCCGAGTCTGAAAGAGGCTGCGACTGCTAAGTCTTCTAAGAAGAAGAAGAA 322
Query 180 GATGACTTTATCGGAGTTTACCAAAGGAGCATACACTGCTCCGAGTTCTGCTGGATTGAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GATGACTTTATCGGAGTTTACCAAAGGAGCATACACTGCTCCGAGTTCTGCTGGATTGAC 382
Query 240 GAGGGAACAGATGCTTCAGCTTCCTACTGGTCCAAGACAACGTTCTGAGGAGGAAATGCA 299
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 383 GAGAGAGCAGATGCTTCAGCTACCTACTGGTCCAAGACAACGTTCTGAGGATGAAATGCA 442
Query 300 ACCTGGTCGTCTCGGTGGTGGGTTCTCTTCTTATGGTGGAGGAAGGTCTAGTGGACCTCC 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 443 ACCTGGTCGTCTCGGTGGTGGATTCTCTTCTTATGGTGGAGGAAGGTCTAGTGGACCTCC 502
Query 360 GGGGAGAATGTCACGAGATCGAGAGGATTCTGATGGGTCTTGGGGCGGTGGTGGTGGTGG 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGGAAGAATGTCACGAGATCGAGAGGATTCTGATGGGTCTTGGGGCGGTGGTGGTGGTGG 562
Query 420 TAGGAGATCTTATGGCGGATTTGATGATGATCAGAGAGGATCTAATTCTAGGGTTTCTGA 479
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 563 GAGGAGATCTTATGGTGGATTTGATGATGATCAGAGGGGATCTAATTCTAGGGTTTCTGA 622
Query 480 TTTCCCACAAGTGTCTAGGGCTGATGAAGATGATGATTGGGGAAAAGGAAAGAAATCGCT 539
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 623 TTTCCCACAAGTTTCTAGGGCTGATGAGGATGATGATTGGGGAAAAGGAAAGAAATCGCT 682
Query 540 TCCTTCGTTTGATCAAGGACGTCAAGGTAGTCGTTATGGTGGTCTTGGAGGCGGGGGTGG 599
|||||||||||||||||||||||||||||||||||||||||| | | || || ||| |
Sbjct 683 TCCTTCGTTTGATCAAGGACGTCAAGGTAGTCGTTATGGTGG---T-G-GG-GGAGGTAG 736
Query 600 TGGTGCTGGCAGTTAtggcggaggaggtggtggtgctggcagttatggcggcggaggtgg 659
| | | | | ||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 737 T--T--TTG--G---TGGAGGAGGAGGAGGTGGTGCTGGCAGTTATGGCGGCGGTGGTGC 787
Query 660 tggtgct-g--gt---ggtggaggtggaTTCTCTAAAGCTGATGAGGTTGATAATTGGGC 713
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGGTGCTGGTAGTGGAGGTGGAGGTGGATTCTCTAAAGCTGATGAGGTTGATAATTGGGC 847
Query 714 AGCGGGTAAAGCAAAATCATCTACATTTGGGTCGGGTTTCCGTGACTCTGGACCGGAGCC 773
|||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 848 AGCGGGTAAAGCAAAATCATCTACGTTTGGGTCGGGTTTCCGTGAATCCGGACCAGAGCC 907
Query 774 TGACCGGTGGGCTCGAGGAGTCCTCCCTTCCGGTGGTGGTGTTCAGGAGGAGCGTCGTCG 833
|||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 908 TGACCGATGGGCTCGAGGAGTCCTTCCTTCTGGTGGTGGGGTTCAGGAAGAGCGACGTCG 967
Query 834 TCTTGTATTGGAACCACGAAAGGTTGATGCAGGAGTGAGTGAAACTCCAACTGCTGGGAA 893
||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||| |||
Sbjct 968 TCTTGTATTTGAACCACGAAAGGCTGATACAGAAGTGAGTGAAACTCCAACTGCTGTGAA 1027
Query 894 GACGAGTAAGCCAAACCCATTTGGAGCTGCTAGACCGAGAGAGCAAGTTTTGGCGGAGAA 953
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 GACGAGTAAGCCGAGTCCATTTGGAGCAGCTAGACCGAGAGAGCAAGTTTTGGCGGAGAA 1087
Query 954 AGGCTTGGACTGGAAGAAACTTGACTCGGATATTGAGGCCAAAAAGGGACAAACAAGCAG 1013
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1088 AGGATTGGACTGGAAGAAACTTGACTCGGATATTGAGGCCAAGAAGGGACAAACAAGCAG 1147
Query 1014 ACCATCGAGCGCGCAATCCAGCAGACCATCAAGTGCTCAATCTAACAGGTCCGAGAGTTC 1073
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1148 ACCATCAAGCGCGCAATCGAGCAGACCATCAAGTGCTCAATCTAACAGGTCTGAGAGTTC 1207
Query 1074 AGCATTGAACAATGTGGAGAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTCGGTGA 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1208 AGCATTGAACAATGTGGAGAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGTGA 1267
Query 1134 TGCAAAACCTAGGGAAGTATTGCTGGAGGAACAAGGGAAAGATTGGCGCAAGATTGATTC 1193
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TGCAAAACCTCGGGAAGTATTGCTGGAGGAACAAGGGAAAGATTGGCGCAAGATTGATTC 1327
Query 1194 TGAACTCGAGCATCGCAGGGTTGACAGGCCTGAAACAGAAGGAGAGAGGATGTTGAAGGA 1253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1328 TGAACTCGAGCATCGCAGGGTTGACAGGCCTGAAACAGAGGGAGAGAGGATGTTGAAGGA 1387
Query 1254 AGAGATCGAAGAACTACGGAAGAAACTCGAGAAGGAAGCAGCTATTGCACCTGAGAGCAA 1313
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1388 AGAGATTGAAGAACTACGGAAGAAACTCGAGAAGGAGGCAGCCATTGCACCTGAGAGCAA 1447
Query 1314 GGAATCTCAACAGGAATCCTACAGTAATCACCAAAATCTACCGGATCTCATACGCGAGAA 1373
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1448 GGAATCTCAACAGGAATCCGACAGTAATCACCAAAATCTACCGGATCTCATACGTGAGAA 1507
Query 1374 AGAAAAGGACCTGGACTTACTGATCCGTGAACTGGACGACAAAGTCAGGTTCAGGCCACG 1433
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1508 AGAAAAGAACCTAGACTTACTGATCCGTGAGCTGGACGACAAAGTCAGGTTCAGGCCACG 1567
Query 1434 AGCAGTTGAGAGGCCTGGATCCAGTGCAAGCAGAGCCGGTTCCTATTCAGAAAGACCTCA 1493
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1568 AGCAGTTGAGAGGCCTGGATCCAGTGCAAGCAGAGGCGGTTCCTATTCAGAAAGACCACA 1627
Query 1494 TTCACGGGCTGGATCAATCGATGAGTCTAGGAACGTCGAATCCATGGAAAGACCTAGATC 1553
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1628 TTCACGGGCTGGATCAATCGATGAGTCTAGGAGTGTTGAATCCATGGAAAGACCTAGATC 1687
Query 1554 ACGTGGCACAGGCGATAATTGGCCAAGACCAGTAGATGATCGAAGAAACTTCCAAGGAAG 1613
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 ACATGGCACAGGCGATAATTGGCCAAGACCAGTAGATGATCGAAGAAACTTCCAAGGAAG 1747
Query 1614 CAAGGAACGTGGATTCTTCAGCAACAGAAACTTCGACAGGTCATCATC-GTCAAGGGAAG 1672
|||||||||||||||||||| |||||||||||||||||||||||| || | |||||||||
Sbjct 1748 CAAGGAACGTGGATTCTTCAACAACAGAAACTTCGACAGGTCATCGTCAG-CAAGGGAAG 1806
Query 1673 GATGGTAAAAAAGGAAACTAAGGATGAAT 1701
||||||||||||||||| ||||||||||
Sbjct 1807 GATGGTAAAAAAGGAAAGGAAGGATGAAT 1835
> AT3G26400.1 | Symbols: EIF4B1 | eukaryotic translation initiation
factor 4B1 | chr3:9666616-9669162 FORWARD LENGTH=1680
Length=1680
Score = 588 bits (318), Expect = 6e-167
Identities = 683/853 (80%), Gaps = 50/853 (6%)
Strand=Plus/Plus
Query 816 TCAGGAGGAGCGTCGTCGTCTT-GTATTGGAACCACGAAAGGTTGATG-CAGGAGTG-AG 872
|||||| || ||||||||| || || ||||||||| |||||||||| | |||||| | ||
Sbjct 744 TCAGGAAGAACGTCGTCGT-TTGGTTTTGGAACCAAGAAAGGTTGA-GTCAGGAG-GAAG 800
Query 873 TGAAACTCCAACTGCTG--G-GAAGACGAGTAAGCCAAACCCATTTGGAGCTGCTAGACC 929
||| |||||| ||| || | ||||||||||||||| || |||||||| || ||||||||
Sbjct 801 TGAGACTCCACCTGTTGTTGAGAAGACGAGTAAGCCGAATCCATTTGGGGCAGCTAGACC 860
Query 930 GAGAGAGCAAGTTTTGGCGGAGAAAGGCTTGGACTGGAAGAA-ACTTGACTCGGATATTG 988
||| ||| | ||||||||||||||||| ||||| |||||||| | ||||||| || ||||
Sbjct 861 GAGGGAGGATGTTTTGGCGGAGAAAGGTTTGGATTGGAAGAAGA-TTGACTCAGAGATTG 919
Query 989 AGGCCAA-AAAGG--G---ACAAACAAGCAGACCATCGAGCGCGCAATCCAGCAGACCAT 1042
|||| || ||||| | ||||| || || ||| |||| || || || || ||||| |
Sbjct 920 AGGCTAAGAAAGGAAGTTCTCAAACGAGTAGGCCAACGAGTGCACATTCTAGTAGACCTT 979
Query 1043 CAAGTGCTCAATCTAACAGGTCCGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGTGA 1102
| |||||||||||||||||||| |||||||||| |||| || | ||||||||||
Sbjct 980 CTAGTGCTCAATCTAACAGGTCTGAGAGTTCAGGATTG---AA--T----AATGTGGTGA 1030
Query 1103 AACCGAGACCAAAGGTGAATCCTTTCGGTGATGCAAAACCTAGGGAAGTATTGCTGGAGG 1162
||||||||||||||||||||||||| || |||||||| ||| | ||||| ||| | ||||
Sbjct 1031 AACCGAGACCAAAGGTGAATCCTTTTGGCGATGCAAAGCCTCGAGAAGTGTTGTTAGAGG 1090
Query 1163 AACAAGGGAAAGATTGGCGCAAGATTGATTCT-GAACTCGAGCATCGCAGGGTTGACAGG 1221
|||||||||| |||||||| ||||| |||| | |||||||||||||||||||||||||||
Sbjct 1091 AACAAGGGAAGGATTGGCGTAAGATGGATT-TGGAACTCGAGCATCGCAGGGTTGACAGG 1149
Query 1222 CCTGAAACAGAAGGAGAGAGGATGTTGAAGGAAGAGATCGAAGAACTACGGAAGAAACTC 1281
||||||||||||| ||||| ||||||||| |||||||| ||||| ||| |||| ||||||
Sbjct 1150 CCTGAAACAGAAGAAGAGAAGATGTTGAAAGAAGAGATTGAAGAGCTAAGGAAAAAACTC 1209
Query 1282 GAGAAGGAAGCAGCTATTGCACCTGAGAGCAAGGAATCTCAACAGGAATCCTA-CAGTAA 1340
||||||||| | | | | || || |||| |||||||||| | || ||| ||| ||||||
Sbjct 1210 GAGAAGGAATCCG-T-T-GCTCCAGAGATCAAGGAATCTGATCAAGAA-CCTGGCAGTAA 1265
Query 1341 TCAC---CA-AA--ATCTACCGGATCTCATACGCGAGAAAGA-AAAGGACCTGGACTTAC 1393
| | || || || |||| || | ||||| | |||||| |||| | ||||| |||
Sbjct 1266 TAATAATCACAATGATTTACCAGAAATAATACGTGGGAAAGAGAAAG-ATCTGGAAATAC 1324
Query 1394 TGATCCGTGAACTGGACGACAAAGTCAGGTTCAGGCCACGAG-C-AGTTGAGAGGCCTGG 1451
| | ||||||| |||||||||||||||||||||||| | || | |||||||||||| ||
Sbjct 1325 TAACCCGTGAATTGGACGACAAAGTCAGGTTCAGGC-A-GAAACCAGTTGAGAGGCCCGG 1382
Query 1452 ATCCAGTGCAAGCAGAGCCGGTTCCTATTCAGAAAGACCTCATTCACGGGCTGGATCAAT 1511
|| ||||| | ||| |||| | |||||||||||| | ||||| |||||||| |||||
Sbjct 1383 GTCTGGTGCAGGTAGAACCGGAACATATTCAGAAAGAACACATTCCCGGGCTGGCTCAAT 1442
Query 1512 CGATGAGTCTAGGAACGTCGAATCCATGGAAAGACCTAGATCACGTGGCACAGGCGATAA 1571
||||| | |||| | ||||| | || ||||| ||||||||||| | | ||||
Sbjct 1443 TGATGAAACCAGGAGTTTTGAATCTACAGAGAGACCCAGATCACGTGGTGCCGTCGATGC 1502
Query 1572 TTGGCCAAGACCAGT-AGATGATC-G--AAGAAACTTCCAAGGAAGCAAGGAACGTGGAT 1627
||| ||||||| | |||| | | ||||||||| ||||||| ||| || || ||||
Sbjct 1503 CTGGGTTAGACCAGCCA-ATGAGCAGCGAAGAAACTTTCAAGGAACCAAAGAGCGCGGAT 1561
Query 1628 TCTTCAGCAACAG 1640
|||||||||||||
Sbjct 1562 TCTTCAGCAACAG 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5