BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920172

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   135    1e-31


> AT1G12800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr1:4361551-4365331 REVERSE LENGTH=2673
Length=2673

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 87/94 (93%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  27    GCCTGATCCACTAACCGAAGCCTTAGAATCTGTAGTTGGTGGTGATAATGATCAGTTCGG  86
             ||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  2101  GCCTGATCCTCTTACTGAAGCTTTAGAATCTGTAGTTGGTGGTGATAATGATCAGTTGGG  2160

Query  87    GGGACGGTTACAAGTAGCAGAGCTCGACGCTGAG  120
             |||||| ||||||| |||||||||||||||||||
Sbjct  2161  GGGACGATTACAAGCAGCAGAGCTCGACGCTGAG  2194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11561582270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5