BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920173

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26340.1 | Symbols:  | N-terminal nucleophile aminohydrolase...   414    3e-115
  AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 | ...   399    8e-111


> AT3G26340.1 | Symbols:  | N-terminal nucleophile aminohydrolases 
(Ntn hydrolases) superfamily protein | chr3:9650417-9652897 
REVERSE LENGTH=1113
Length=1113

 Score =  414 bits (224),  Expect = 3e-115
 Identities = 268/290 (92%), Gaps = 0/290 (0%)
 Strand=Plus/Plus

Query  15   GGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTCCTCACAATCT  74
            ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct  310  GGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATCTCGTCGCAATCT  369

Query  75   GTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACGATGGCTGGAGGAGCTGCA  134
            |||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||| 
Sbjct  370  GTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGTGCTGCT  429

Query  135  GATTGCCAATTTTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATGCGCTGGCAAAC  194
            ||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct  430  GATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTACATGAGCTGGCAAAC  489

Query  195  AAGAGGAGAATCTCTGTTTCCGGAGCTTCAAAACTTCTTGCGAACATGCTGTATTCATAC  254
            || ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| 
Sbjct  490  AAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACATGCTCTATTCATAT  549

Query  255  CGAGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAAC  304
            || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  550  CGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGATGAAAC  599


> AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 
| chr1:4452212-4454876 FORWARD LENGTH=1280
Length=1280

 Score =  399 bits (216),  Expect = 8e-111
 Identities = 234/243 (96%), Gaps = 0/243 (0%)
 Strand=Plus/Plus

Query  64   CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACGATGGCTG  123
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  493  CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTG  552

Query  124  GAGGAGCTGCAGATTGCCAATTTTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG  183
            |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  553  GAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG  612

Query  184  CGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCAAAACTTCTTGCGAACATGC  243
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  613  AGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAACTTCTTGCCAACATGC  672

Query  244  TGTATTCATACCGAGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAA  303
            | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  673  TCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAA  732

Query  304  CTG  306
            |||
Sbjct  733  CTG  735


 Score = 99.0 bits (53),  Expect = 3e-20
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  12   GGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTC  64
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  GGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTC  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20911383584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5