BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920182
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGT... 2824 0.0
> AT1G13120.1 | Symbols: | | chr1:4469181-4473213 REVERSE LENGTH=2427
Length=2427
Score = 2824 bits (1529), Expect = 0.0
Identities = 1744/1847 (94%), Gaps = 18/1847 (1%)
Strand=Plus/Plus
Query 40 GGGGAATTGTTTTGGAACCTCCTTGTCCTAAAAGCGTTGATGGGATTAGCATTGACCCTG 99
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 441 GGGG-ATTGTTTTGGAACCTCCTTGTCCTAAAAGTGTTGATGGGATTAGCATTGATCCTG 499
Query 100 AGCCTAATTGGAATTTCGATAGTTTGGTCGCTGAGATCGAGTCTGTTGAAAAGAAGCTTA 159
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |
Sbjct 500 AGCCTAATTGGAATTTCGAGAGTTTGGTCGCTGAGATTGCTTCTGTTGAAAAGAAGCTCA 559
Query 160 ATGGCTTCTCAATGTTTCCTCAGCCAATTACTAACACTACCTTACGGGTGGGAAGGAGTA 219
||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 560 ATGGCTTCTCAATGTATCCTCAGCCAATTACTAACACAACCTTACGGATGGGAAGGAG-A 618
Query 220 -GTGGGGGATTTGTGATGCGTGTATCAGATGAAGAGATGGAGAGTGATG-A--TGTaga- 274
|||| |||||||| |||| ||| ||||| || |||||||||||||| | | || |||
Sbjct 619 GGTGGAGGATTTGTAATGCATGTCTCAGAAGATGAGATGGAGAGTGACGAAGGTGAAGAG 678
Query 275 a--ga--a-gaagaagaagaagaagaTCATAGTCAAATCTGTACAGCGGGGAAACGTTTT 329
| || | || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 679 AGTGATGATGAGGAAGAAGAAGAAGATCATAGTCAAATCTGTACAGCGGGAAAACGTTTT 738
Query 330 GCCTGTGATGAGCTTTATTTGAGTGATGAATCTGATGATGAGTTTGATCATGAACCTGAG 389
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 739 GCCTGTGATGAGCTTTACTTGAGTGATGAATCTGATGAAGAGTTTGATCATGAACCTGAG 798
Query 390 TATATGATGAATAAGATGGGTTTGGCTGAGAGTGCCCTATATGAGGTTATTAACGACCAC 449
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 799 TATATGATGAATAAGTTGGGTCTGGCTGAGAGTGCCCTATATGAGGTTATCAACGACCAC 858
Query 450 CAAAACGAAATTAAGGATGACATTAGGAATCAAGTATCAGTTGTTGAAACGGAAATAATG 509
|||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 859 CAAACCGAAATCAAGGACGACATTAGGAATCAAGTATCAGTTGTTGAAACAGAAATAATG 918
Query 510 AATGAGATTGAAACGTCTCGCTCTGCCATAGCCCGGGTTGAAAAGTACAGTGAAACTCGA 569
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 919 AATGAGATTGAAACGTCTCTCTCTGCCATAGCCCGGGTTGAAAAGTACAGTGAGACTCGG 978
Query 570 AAAGAAGTTGAACGGAAACTTGATCTTCAATATCAGCGAAAAGTTGCTGAAGCACTTGAT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AAAGAAGTTGAACGGAAACTTGATCTTCAATATCAGCGAAAAGTTGCTGAAGCACTTGAT 1038
Query 630 ACCCATCTGACTGCAGTCCAACGCGAACATAAAATTAAATCGCAAATagaagaaagaaag 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 ACCCATCTGACTGCAGTCCAACGCGAACATAAAATTAAATCGCAAATAGAAGAAAGAAAG 1098
Query 690 ataaggagcgaggaagctcaggaggaggccaggaggaaggaaaggGCTCATCAAGAAGAG 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 ATAAGGAGCGAGGAAGCTCAGGAGGAGGCCAGGAGGAAGGAAAGGGCTCATCAAGAAGAG 1158
Query 750 AAAATACGTCAAGAAAAAGCTCACGCAGAGGCTGAAATGCTAGCaaaaatcagagctgaa 809
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1159 AAAATACGTCAAGAAAAAGCTCGCGCAGAGGCTCAAATGCTAGCAAAAATCAGAGCTGAA 1218
Query 810 gaagaaaagaaagaagttgagagaaaggcagccaaagaagtagccgaaaaagaagtagca 869
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1219 GAAGAAAAGAAAGAAGTTGAGAGAAAGGCAGCCAGAGAAGTAGCTGAAAAAGAAGTAGCA 1278
Query 870 gaTCGCAAAGCTGCCGAACAAAAACTTGCGGAACAGAAGGCTGTGATAGAGAGTGTTACG 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GATCGCAAAGCTGCCGAACAAAAACTTGCGGAACAGAAGGCTGTGATAGAGAGTGTTACG 1338
Query 930 GGGAGTTCAGCTACATCAAATGCTCAAGCTGGGGGTAAATCAATCCGAGCTGCAGAAAAT 989
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1339 GGGAGTTCAGCTACATCAAATGCTCAAGCTGGGGGTAATTCAATCCGAGCTGCAGAAAGT 1398
Query 990 GCTTTGGCATTGGAGAACCACAGATTGAAAAAGCTCGAAGAATTAGAAACAATGAACCAA 1049
|||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1399 GCTTTGATATTGGAGAACCACAGATTGAAAAAGCTCGAAGAACTAGAAACAACGAACCAA 1458
Query 1050 TCGCTAAAGTCACGTTCAAATGAGAACTTTAGCAGTTTTGAAAAGCATATTGGAAGGGTG 1109
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1459 TCGCTTAAGTCACGTTCAAATGAAAACTTTAGCAGTTTTGAGAAGCATATTGGAAGAGTG 1518
Query 1110 ATAAGGCAAATAAGTGGGACAAAGGATAGTGTAAGTGGGAAAATCAATGAAATTGTCAAA 1169
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1519 ATAAGGCAAATAAGTGGGACAAAGGATAGTGTAAGTGGGAAAATCAATGATATTGTGAAA 1578
Query 1170 ATATTTAAAGACCCTCGTTGTCCGGTATCCATTAGTATTGCAGCTTTTGCAAAGAAGATG 1229
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1579 ATATTTAAAGACCCTCGTTGTCCGGTATCCATAAGTATTGCAGCTTTTGCAAAGAAGATG 1638
Query 1230 GTCACCACTAAGGAGAAACCAAACCCTTTTGCATCCAGCTATGTCATTGTTTACATCACC 1289
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1639 GTCACCACTAAGGAAAAACCAAACCCTTTTGCATGCAGCTATGTCATTGTTTACATCAAC 1698
Query 1290 TCCCAGTTTCCACAAGCTATGGATATTCTTCTTGCTGAATTCCACAAAGCTTGCATTTAC 1349
|| |||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1699 TCACAGTTTCCCCAAGTTATGGATATTCTTCTCGCGGAATTCCACAAAGCTTGCATTTAC 1758
Query 1350 ACTGTTCCAAAGCATATTATAAACTCACAGTCAGCGTGGGATTCAGACGCATATGAACGC 1409
||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1759 ACTGTCCCAAAGCATATTGTAAACTCACAGTCAGCTTGGGATTCAGACGCATATGAACGC 1818
Query 1410 CTAGATTCTATAATGAGGCTCTACGGTGCACTTGTTCAGACCGATACCCGCGGTGGCAAT 1469
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1819 CTAGATTCTATAATGAGGCTCTACGGTGCACTTGTTCAGACCGATATCCGCGTTGGCAAT 1878
Query 1470 GCTACTAACGTTCATGGGATCGAACATGGATGGGCTTGGTTAGCCCGGTTTCTTAACAAA 1529
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1879 GCTACTAACGTTCATGGGATAGAACATGGATGGGCTTGGTTAGCCCGGTTCCTTAACAAA 1938
Query 1530 ATCCCAGCCAACAGAGCCACTGCAACAGCCTTGAACTCCTTTCTCCAGACGGCAGGGTTT 1589
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1939 ATCCCAGCCAACAGAGCCACTGCGACAGCCTTGAACTCCTTTCTCCAGACGGCTGGGTTT 1998
Query 1590 GGTCTTCATCAGCGGTACAAATCTCAGTTTGTGAAGGTTGTGAATGTTGTGAGAGAGCAT 1649
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1999 GGTCTTCATCAGAGGTACAAATCTCAGTTTCTGAAGGTTGTGAATGTTGTGAGAGAGCAT 2058
Query 1650 TTCTTGCAGAAATTGAAGGCGAAAAAGGACACGTCGGATCTACTAT-TGATCATAGCCGA 1708
||||||||||||||| |||||| |||||||||||||||||||| | |||||||||||||
Sbjct 2059 TTCTTGCAGAAATTGCGGGCGAAGAAGGACACGTCGGATCTACT-TGTGATCATAGCCGA 2117
Query 1709 AATAACAGCGTACTTAGATGACCGGATGTATCTCAAGGAACCTGAAGGAAGAAG-TATGA 1767
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2118 AATCACAGCGTACTTAGATGACCGGATGTATCTCAAGGAACCTGAAGGAAGA-GCTATGA 2176
Query 1768 AGACGACGAGTACCTTGTCCTCGGAA-TATACTGCTGAAATAAATCAACAGAACGACAAT 1826
||||||| |||||||||||||| ||| | |||||||||| ||||||| | |||| |||||
Sbjct 2177 AGACGACTAGTACCTTGTCCTCTGAACT-TACTGCTGAATTAAATCAGCCGAACTACAAT 2235
Query 1827 CAGAATTACAAGAATAATTATTACAGAGGCTACTATTGATTTTATGT 1873
||||||||| ||| ||| |||||||| ||||||||||||| ||||
Sbjct 2236 CAGAATTACCAGAGGAATGATTACAGAAACTACTATTGATTTGATGT 2282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5